Detailed information NTG0625977

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: HK939_RS01565
• Genome accession: NZ_CP086657
• Coordinates: 307847..309265 (+)
• Length: 472 a.a.
• NCBI ID: WP_002779315.1
• Uniprot ID: -
• Organism: Campylobacter coli strain P4581
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 302847..314265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK939_RS01550 (HK939_001540)	-	303232..303870 (+)	639	WP_002784063.1	HAD family hydrolase	-
HK939_RS01555 (HK939_001545)	nifJ	303974..307534 (+)	3561	WP_002779317.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
HK939_RS01560 (HK939_001550)	ctsR	307558..307869 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
HK939_RS01565 (HK939_001555)	ctsD	307847..309265 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
HK939_RS01570 (HK939_001560)	ctsP	309258..309854 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
HK939_RS01575 (HK939_001565)	-	309851..310447 (+)	597	WP_002779313.1	CDC27 family protein	-
HK939_RS01580 (HK939_001570)	ctsE	310440..312002 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
HK939_RS01585 (HK939_001575)	ctsF	311989..313164 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
HK939_RS01590 (HK939_001580)	-	313161..313925 (-)	765	WP_002781157.1	TSUP family transporter	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53513.05 Da
• Isoelectric Point: 6.5150

>NTDB_id=625977 HK939_RS01565 WP_002779315.1 307847..309265(+) (ctsD) [Campylobacter coli strain P4581]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=625977 HK939_RS01565 WP_002779315.1 307847..309265(+) (ctsD) [Campylobacter coli strain P4581]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGTCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTACAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGACAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.72	100	0.807