Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   HK939_RS01560 Genome accession   NZ_CP086657
Coordinates   307558..307869 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain P4581     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302558..312869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK939_RS01550 (HK939_001540) - 303232..303870 (+) 639 WP_002784063.1 HAD family hydrolase -
  HK939_RS01555 (HK939_001545) nifJ 303974..307534 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  HK939_RS01560 (HK939_001550) ctsR 307558..307869 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  HK939_RS01565 (HK939_001555) ctsD 307847..309265 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HK939_RS01570 (HK939_001560) ctsP 309258..309854 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  HK939_RS01575 (HK939_001565) - 309851..310447 (+) 597 WP_002779313.1 CDC27 family protein -
  HK939_RS01580 (HK939_001570) ctsE 310440..312002 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=625976 HK939_RS01560 WP_002779316.1 307558..307869(+) (ctsR) [Campylobacter coli strain P4581]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=625976 HK939_RS01560 WP_002779316.1 307558..307869(+) (ctsR) [Campylobacter coli strain P4581]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553