Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LN051_RS07020 Genome accession   NZ_CP086654
Coordinates   1461358..1462188 (-) Length   276 a.a.
NCBI ID   WP_420854007.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1456358..1467188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS07005 (LN051_07005) xerC 1456864..1457754 (-) 891 WP_229291833.1 tyrosine recombinase XerC -
  LN051_RS07010 (LN051_07010) trmFO 1457876..1459180 (-) 1305 WP_229291834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LN051_RS07015 (LN051_07015) topA 1459193..1461262 (-) 2070 WP_229291835.1 type I DNA topoisomerase -
  LN051_RS07020 (LN051_07020) dprA 1461358..1462188 (-) 831 WP_420854007.1 DNA-processing protein DprA Machinery gene
  LN051_RS07025 (LN051_07025) sucD 1462538..1463446 (-) 909 WP_229291837.1 succinate--CoA ligase subunit alpha -
  LN051_RS07030 (LN051_07030) sucC 1463468..1464634 (-) 1167 WP_229291838.1 ADP-forming succinate--CoA ligase subunit beta -
  LN051_RS07035 (LN051_07035) - 1464957..1465226 (-) 270 WP_229291839.1 hypothetical protein -
  LN051_RS07040 (LN051_07040) - 1465312..1466088 (-) 777 WP_229291840.1 ribonuclease HII -
  LN051_RS07045 (LN051_07045) ylqF 1466078..1466959 (-) 882 WP_229291841.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 31515.49 Da        Isoelectric Point: 9.0835

>NTDB_id=625968 LN051_RS07020 WP_420854007.1 1461358..1462188(-) (dprA) [Staphylococcus ratti strain CCM 9025]
MYQLLDDPKVNLSFDVIPFLRNHPLIHAKPHLHQKYLRLQTLNINEIQERLYGNDIQPVTIFDTIYPQLLKEIYRPPLLF
YCKGNLPLLNTFRYYKLAIVGAREHTSYGERAIGYLLQNMSHMPLVIVSGLAKGTDALAHRYALKNHFPTIGVLGFGHAH
HYPKVTEPLRHLMETTAHGLTISEYPPFTRPARHHFPERNRIISGLCQGVLVTEAKERSGALITLDQALEQNRNVYVLPG
DMFNLHTKGNLLRAKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 831 bp        

>NTDB_id=625968 LN051_RS07020 WP_420854007.1 1461358..1462188(-) (dprA) [Staphylococcus ratti strain CCM 9025]
ATGTATCAGCTACTAGATGACCCTAAAGTAAACTTATCATTCGACGTAATTCCTTTCCTTCGCAATCACCCCCTTATCCA
CGCTAAACCACATTTGCATCAAAAATATTTAAGGCTTCAAACACTTAATATTAATGAGATTCAAGAACGATTATATGGTA
ATGATATACAGCCAGTTACTATTTTTGATACGATTTACCCTCAATTATTAAAAGAAATTTATCGTCCACCATTGTTGTTT
TATTGTAAAGGCAACCTACCATTATTAAATACTTTTCGTTATTATAAATTAGCTATAGTTGGTGCTAGAGAACATACATC
ATATGGTGAACGTGCAATTGGTTATTTGTTACAAAATATGAGCCATATGCCTTTGGTAATTGTTTCAGGGCTTGCTAAAG
GGACAGATGCACTTGCGCATCGATATGCACTAAAAAATCATTTTCCGACTATAGGTGTTTTAGGATTTGGTCATGCGCAC
CATTATCCTAAAGTTACAGAACCTTTACGCCATTTAATGGAAACAACAGCTCATGGCCTTACGATAAGTGAATATCCGCC
ATTTACCAGACCTGCACGGCATCATTTTCCAGAGCGCAATCGCATTATAAGCGGCTTGTGTCAAGGTGTACTCGTTACAG
AAGCTAAAGAAAGAAGCGGGGCGTTAATCACTTTAGATCAAGCTTTAGAACAAAATAGAAATGTCTATGTTTTGCCTGGT
GATATGTTTAATCTGCACACTAAAGGAAATTTATTAAGAGCAAAAGAAGGTGCTGAAATCGTCTTATCAGCGGAGGATAT
TTTGAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(54-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.25

86.957

0.489
  dprA Staphylococcus aureus N315

56.067

86.594

0.486