Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR19_RS10215 Genome accession   NZ_CP103874
Coordinates   2175046..2176254 (-) Length   402 a.a.
NCBI ID   WP_302508101.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170046..2181254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS10180 (NYR19_10190) fdxH 2170642..2171553 (+) 912 WP_285097630.1 formate dehydrogenase subunit beta -
  NYR19_RS10185 (NYR19_10195) - 2171556..2172215 (+) 660 WP_302508092.1 formate dehydrogenase subunit gamma -
  NYR19_RS10190 (NYR19_10200) fdhE 2172217..2173140 (+) 924 WP_302508094.1 formate dehydrogenase accessory protein FdhE -
  NYR19_RS10195 (NYR19_10205) - 2173206..2173478 (-) 273 WP_018345916.1 GNAT family N-acetyltransferase -
  NYR19_RS10200 (NYR19_10210) yacG 2173562..2173780 (-) 219 WP_018345915.1 DNA gyrase inhibitor YacG -
  NYR19_RS10205 (NYR19_10215) coaE 2173770..2174402 (-) 633 WP_302508097.1 dephospho-CoA kinase -
  NYR19_RS10210 (NYR19_10220) - 2174417..2175049 (-) 633 WP_230586435.1 prepilin peptidase -
  NYR19_RS10215 (NYR19_10225) pilC 2175046..2176254 (-) 1209 WP_302508101.1 type II secretion system F family protein Machinery gene
  NYR19_RS10220 (NYR19_10230) pilB 2176270..2177679 (-) 1410 WP_302508102.1 GspE/PulE family protein Machinery gene
  NYR19_RS10225 (NYR19_10235) pilA 2177696..2178157 (-) 462 WP_013746605.1 prepilin peptidase-dependent pilin Machinery gene
  NYR19_RS10230 (NYR19_10240) ampD 2178262..2178816 (+) 555 WP_018345909.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NYR19_RS10235 (NYR19_10245) - 2178903..2179238 (+) 336 WP_013746603.1 hypothetical protein -
  NYR19_RS10240 (NYR19_10250) - 2179347..2180741 (+) 1395 WP_302508103.1 chloride channel protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 45735.00 Da        Isoelectric Point: 9.8217

>NTDB_id=625955 NYR19_RS10215 WP_302508101.1 2175046..2176254(-) (pilC) [Gallibacterium anatis strain TH22]
MPEYRWKGKDQFGNSVKGVLIADDREQARQRLFAQGIFLSSLNKNWQFSPTLTLEKQAEFLLQFALLLQAEIPLKPALQM
LRESCDSTSLYQLIGRCLTALNSGFSLSTALKNEKQFLSEQEWQLLYSGEISAQLAKVMKQLADNKLRQLKLRQQMKKIM
FYPLMMLSVSMLLTVLLLLFIVPKFADLYDQQQHALPLITQVLLQSSQFLQNYLWQLLAVFVVGIVALRRCYLMFPSLRR
QLLKLACLVPSIQRLYLQLQQIQFYTILSSMLNSGITLQQSLATFVPQSGYQRSRAATESILAIEAQQCLQSLQAGQRFS
AGLSSRFIPYQAKQMIIIGENSGNLVQMLHYLAEQSQQNLSNQVELFSKLLEPILMLIIGSIIGVVIAGMYLPIFNMGNV
VL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=625955 NYR19_RS10215 WP_302508101.1 2175046..2176254(-) (pilC) [Gallibacterium anatis strain TH22]
ATGCCGGAATATCGTTGGAAAGGAAAAGATCAATTTGGTAATAGCGTCAAAGGGGTATTGATTGCGGACGATCGGGAACA
GGCACGTCAACGCCTTTTTGCACAAGGGATCTTTTTATCCTCATTAAATAAAAATTGGCAATTTTCCCCCACACTAACAT
TAGAGAAACAAGCTGAATTTTTATTGCAGTTCGCATTATTGTTGCAGGCAGAGATACCGTTGAAACCGGCGTTGCAGATG
TTACGGGAAAGTTGTGATTCAACCTCTTTATACCAACTGATAGGGCGGTGCTTAACCGCATTGAACAGTGGTTTTTCATT
ATCAACGGCATTAAAAAATGAAAAGCAATTTTTATCGGAACAGGAGTGGCAATTGTTATACAGCGGTGAAATCAGTGCGC
AATTGGCAAAGGTAATGAAACAATTAGCGGATAATAAATTGCGACAACTAAAGTTACGGCAGCAGATGAAAAAAATTATG
TTTTATCCGTTAATGATGTTGTCGGTGTCAATGTTATTAACGGTGTTATTGCTGCTCTTTATTGTGCCTAAATTTGCTGA
TTTATATGATCAACAACAGCACGCCTTACCGTTGATTACACAAGTTTTATTACAGAGCTCACAATTTTTGCAAAATTATC
TGTGGCAATTATTGGCAGTATTTGTCGTAGGCATTGTGGCGTTACGGCGGTGTTATCTGATGTTTCCTTCATTACGTCGG
CAATTATTGAAATTGGCTTGCTTAGTGCCGTCAATTCAGCGGCTTTATTTGCAGTTACAACAAATTCAGTTTTATACCAT
TCTCTCTTCAATGTTAAATTCAGGCATAACCTTGCAACAGAGTTTAGCCACCTTTGTGCCTCAATCCGGTTATCAACGAA
GCCGAGCAGCAACAGAATCCATTTTAGCGATCGAAGCACAGCAATGTTTACAGAGCTTGCAGGCAGGACAACGATTTTCT
GCAGGGTTGAGCAGTCGCTTTATTCCTTATCAGGCAAAACAGATGATTATTATCGGTGAAAATAGCGGCAATTTAGTGCA
GATGTTGCACTATTTAGCTGAACAGAGCCAACAAAATTTATCAAATCAGGTGGAGCTTTTTTCTAAATTATTGGAGCCGA
TATTAATGTTAATAATCGGCTCGATTATTGGTGTGGTTATTGCCGGTATGTATCTACCGATTTTTAATATGGGCAATGTG
GTTTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-393)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

36.118

100

0.366
  pilC Haemophilus influenzae 86-028NP

35.872

100

0.363