Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LN051_RS00550 Genome accession   NZ_CP086654
Coordinates   125633..126298 (+) Length   221 a.a.
NCBI ID   WP_229292698.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 120633..131298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS00525 (LN051_00525) - 122053..122385 (+) 333 WP_229292694.1 hypothetical protein -
  LN051_RS00530 (LN051_00530) - 122445..122972 (+) 528 WP_229292695.1 hypothetical protein -
  LN051_RS00535 (LN051_00535) - 123347..124114 (-) 768 WP_229292696.1 hypothetical protein -
  LN051_RS00540 (LN051_00540) - 124458..124730 (-) 273 WP_229292697.1 hypothetical protein -
  LN051_RS00545 (LN051_00545) - 125064..125501 (-) 438 WP_338061514.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein -
  LN051_RS00550 (LN051_00550) braR 125633..126298 (+) 666 WP_229292698.1 response regulator transcription factor Regulator
  LN051_RS00555 (LN051_00555) braS 126367..127218 (+) 852 WP_229293578.1 sensor histidine kinase Regulator
  LN051_RS00560 (LN051_00560) - 127309..128058 (+) 750 WP_229292699.1 ABC transporter ATP-binding protein -
  LN051_RS00565 (LN051_00565) - 128060..128254 (+) 195 WP_229292700.1 hypothetical protein -
  LN051_RS00570 (LN051_00570) - 128254..130053 (+) 1800 WP_229292701.1 ABC transporter permease -
  LN051_RS00575 (LN051_00575) isaB 130336..130836 (+) 501 WP_229292702.1 immunodominant staphylococcal antigen IsaB family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25718.11 Da        Isoelectric Point: 6.0176

>NTDB_id=625946 LN051_RS00550 WP_229292698.1 125633..126298(+) (braR) [Staphylococcus ratti strain CCM 9025]
MKIMIVEDDMIIAESLVKELKKWNHDAINIQDYYHIKERFLDMQPHLVLLDINLPHLNGFHWCQEIRNVSKVPIIFISSA
SDNMNQMMSMQMGADDFIEKPFNLSLTIMKIQALLRRAYDFKVEQTELNVKGCQLLVEKALLTYEGETVALTLTELQILQ
LLFLNEGQFVSRNALIEQCWQSENFIDDNTLAVNMSRLRKKLKQLGVLDLIQTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=625946 LN051_RS00550 WP_229292698.1 125633..126298(+) (braR) [Staphylococcus ratti strain CCM 9025]
ATGAAAATCATGATTGTTGAAGACGATATGATTATTGCTGAGAGTTTAGTTAAAGAACTAAAAAAATGGAATCATGACGC
AATCAATATTCAAGACTATTACCACATTAAAGAACGTTTTTTGGATATGCAGCCCCATTTAGTTTTATTAGATATTAACC
TCCCTCATTTGAATGGTTTTCATTGGTGCCAAGAAATACGAAATGTATCTAAAGTTCCCATTATTTTTATTAGTTCGGCT
TCAGACAATATGAATCAAATGATGTCCATGCAAATGGGTGCGGATGATTTTATTGAAAAGCCTTTTAATTTAAGTTTAAC
GATTATGAAAATACAAGCATTATTAAGACGCGCTTATGATTTTAAAGTGGAGCAAACGGAACTCAACGTGAAAGGGTGTC
AACTTTTGGTTGAGAAAGCTTTGCTAACTTATGAAGGGGAAACTGTTGCATTAACATTGACGGAACTGCAAATTTTGCAA
TTGCTGTTTTTAAATGAAGGTCAATTTGTAAGTCGTAATGCTTTGATCGAACAATGTTGGCAATCAGAAAATTTTATAGA
TGATAATACGCTTGCGGTTAATATGTCTCGTTTACGTAAAAAGCTTAAGCAATTAGGGGTATTGGATTTGATACAAACAA
AGAAAAACGTGGGTTATAAAGTGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)

Response regulator receiver domain (Response_reg)

(3-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

67.421

100

0.674