Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LNV98_RS00040 Genome accession   NZ_CP086653
Coordinates   9275..9793 (+) Length   172 a.a.
NCBI ID   WP_011254001.1    Uniprot ID   -
Organism   Lactobacillus acidophilus strain NC55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4275..14793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNV98_RS00025 (LNV98_00025) gyrB 4283..6247 (+) 1965 WP_003549374.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LNV98_RS00030 (LNV98_00030) gyrA 6258..8732 (+) 2475 WP_003549372.1 DNA gyrase subunit A -
  LNV98_RS00035 (LNV98_00035) rpsF 8933..9229 (+) 297 WP_003549370.1 30S ribosomal protein S6 -
  LNV98_RS00040 (LNV98_00040) ssb 9275..9793 (+) 519 WP_011254001.1 single-stranded DNA-binding protein Machinery gene
  LNV98_RS00045 (LNV98_00045) rpsR 9822..10058 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  LNV98_RS00050 (LNV98_00050) - 10237..12258 (+) 2022 WP_003549345.1 DHH family phosphoesterase -
  LNV98_RS00055 (LNV98_00055) rplI 12271..12726 (+) 456 WP_003549343.1 50S ribosomal protein L9 -
  LNV98_RS00060 (LNV98_00060) dnaB 12752..14146 (+) 1395 WP_003549341.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18829.48 Da        Isoelectric Point: 4.7317

>NTDB_id=625927 LNV98_RS00040 WP_011254001.1 9275..9793(+) (ssb) [Lactobacillus acidophilus strain NC55]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=625927 LNV98_RS00040 WP_011254001.1 9275..9793(+) (ssb) [Lactobacillus acidophilus strain NC55]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.64
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.056

100

0.57