Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LMF57_RS15760 Genome accession   NZ_CP086598
Coordinates   3454200..3455573 (+) Length   457 a.a.
NCBI ID   WP_025874296.1    Uniprot ID   A0AA43HP51
Organism   Stenotrophomonas sp. SI-NJAU-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3444898..3459741 3454200..3455573 within 0


Gene organization within MGE regions


Location: 3444898..3459741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMF57_RS15720 (LMF57_15720) - 3444898..3445572 (+) 675 WP_229290185.1 hypothetical protein -
  LMF57_RS15725 (LMF57_15725) - 3445566..3446579 (+) 1014 WP_117311229.1 hypothetical protein -
  LMF57_RS15730 (LMF57_15730) - 3446573..3447589 (+) 1017 WP_117311231.1 TraB/GumN family protein -
  LMF57_RS15735 (LMF57_15735) - 3447908..3448177 (+) 270 WP_049447475.1 hypothetical protein -
  LMF57_RS15740 (LMF57_15740) - 3448229..3449986 (+) 1758 WP_229290186.1 ABC transporter transmembrane domain-containing protein -
  LMF57_RS15745 (LMF57_15745) sucD 3450088..3450963 (-) 876 WP_017356169.1 succinate--CoA ligase subunit alpha -
  LMF57_RS15750 (LMF57_15750) sucC 3450985..3452154 (-) 1170 WP_025874298.1 ADP-forming succinate--CoA ligase subunit beta -
  LMF57_RS15755 (LMF57_15755) - 3452532..3454145 (+) 1614 WP_117311237.1 ATP-binding protein -
  LMF57_RS15760 (LMF57_15760) pilR 3454200..3455573 (+) 1374 WP_025874296.1 sigma-54 dependent transcriptional regulator Regulator
  LMF57_RS15765 (LMF57_15765) pilB 3455771..3457498 (-) 1728 WP_229290187.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LMF57_RS15770 (LMF57_15770) - 3458258..3458515 (-) 258 WP_229290188.1 hypothetical protein -
  LMF57_RS15775 (LMF57_15775) - 3458896..3459741 (-) 846 WP_229290189.1 sterol desaturase family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49638.94 Da        Isoelectric Point: 6.6449

>NTDB_id=625661 LMF57_RS15760 WP_025874296.1 3454200..3455573(+) (pilR) [Stenotrophomonas sp. SI-NJAU-1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=625661 LMF57_RS15760 WP_025874296.1 3454200..3455573(+) (pilR) [Stenotrophomonas sp. SI-NJAU-1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGTGCTTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGCCCCGCCG
CCGAACAGGCCGCACGCCTGCTGGGCGAATCGCCGGCGATGGACGTGCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGGGTGGGCAAGGAACTGGTTGCACGCACCATCCACGCCCAGGGTGCACG
CGCCGCTGGGCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCACCGAGTTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGCGCTCATGCCGACAAGCCGGGACTGTTCCAGGCCGCCCACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGCGCCGTCGGCGCCCC
CAGCGAAGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAAGACGGGCGTTTCC
GCCACGACCTCTACTACCGCATCAACGTCATCGAACTGCGCGTACCACCGCTGCGCGAGCGTCGCCAGGACCTGCCCGCA
CTGGCCGCGTCGATCCTGGCGCGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTAGCGCCGTCGGCGCTGGACGC
GTTGGCCCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCGCTGGCCGAGGAAG
ACCGTATCGGTGCCGACGACCTGCGCCTGCCGCAGCATGCGCCGCGCTCACCGGGCAGCGCCGCCCACGCTGAAGCGGTG
GTGGATCTGCATCCGGGCAGTGCCGCCCTGCCCTCGTATATCGAGCAGCTCGAGCGCAGTGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACTGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.596

99.781

0.635
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49