Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VIBNI_RS00920 Genome accession   NC_022528
Coordinates   185734..186348 (-) Length   204 a.a.
NCBI ID   WP_004397669.1    Uniprot ID   A0AAV2VQY2
Organism   Vibrio nigripulchritudo     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 180734..191348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS00910 (VIBNI_A0182) aceF 182342..183919 (+) 1578 WP_022549582.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  VIBNI_RS00915 (VIBNI_A0183) lpdA 184165..185595 (+) 1431 WP_022549583.1 dihydrolipoyl dehydrogenase -
  VIBNI_RS00920 (VIBNI_A0184) opaR 185734..186348 (-) 615 WP_004397669.1 TetR/AcrR family transcriptional regulator Regulator
  VIBNI_RS00925 (VIBNI_A0185) hpt 186603..187136 (+) 534 WP_004397670.1 hypoxanthine phosphoribosyltransferase -
  VIBNI_RS00930 (VIBNI_A0186) - 187244..188455 (-) 1212 WP_022549584.1 multifunctional CCA addition/repair protein -
  VIBNI_RS00935 (VIBNI_A0187) - 188539..190146 (+) 1608 WP_022549585.1 ExeA family protein -
  VIBNI_RS00940 (VIBNI_A0188) - 190139..190861 (+) 723 WP_022549586.1 general secretion pathway protein GspB -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23439.59 Da        Isoelectric Point: 5.0114

>NTDB_id=62566 VIBNI_RS00920 WP_004397669.1 185734..186348(-) (opaR) [Vibrio nigripulchritudo]
MDTVKKRPRTRLSPQKRKEQLHDIAIEVFAKRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLSQVEKQYALFIN
ESLKVDATAEENLTSLTQNIIKAALDGTHWMKVWFEWSTSTREEVWPLFLSSNEESQKRIEDMFLTAMERGEVCDEHKAE
DLAKLLHGICYSLYVQANRNPDPEYLEGLVGSFLGMLCIYKQDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=62566 VIBNI_RS00920 WP_004397669.1 185734..186348(-) (opaR) [Vibrio nigripulchritudo]
ATGGATACAGTAAAAAAACGTCCAAGAACAAGGCTATCTCCACAAAAGCGTAAAGAACAGCTTCACGATATTGCTATCGA
AGTGTTCGCAAAACGCGGCATCGGTCGCGGGGGTCACGCTGATATCGCAGAAATTGCACAGGTTTCTGTTGCAACAGTAT
TCAACTACTTCCAGACACGTGAAGACTTGGTTGATGAAGTACTGAGTCAGGTTGAAAAGCAATACGCGCTATTCATCAAC
GAAAGCTTGAAGGTTGACGCAACAGCTGAAGAAAACCTGACAAGCCTAACGCAAAACATCATCAAAGCGGCACTGGATGG
CACTCACTGGATGAAAGTCTGGTTTGAGTGGAGCACATCCACTCGTGAAGAAGTGTGGCCACTGTTCCTGTCTAGCAACG
AAGAGTCACAAAAGCGTATTGAAGACATGTTCCTGACAGCAATGGAGCGTGGTGAAGTATGTGACGAGCATAAAGCCGAA
GACTTAGCGAAACTGCTTCACGGCATCTGCTACTCATTGTACGTTCAGGCAAACCGTAACCCGGATCCTGAGTACCTAGA
AGGTTTGGTTGGAAGCTTCCTTGGCATGCTTTGCATTTACAAGCAAGACCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(24-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

61.275

100

0.613
  hapR Vibrio cholerae C6706

59.5

98.039

0.583
  hapR Vibrio cholerae strain A1552

59.5

98.039

0.583

Multiple sequence alignment