Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NYF25_RS08355 Genome accession   NZ_CP103850
Coordinates   1719178..1720440 (-) Length   420 a.a.
NCBI ID   WP_000472302.1    Uniprot ID   P63789
Organism   Staphylococcus aureus strain NRL 02/947     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714178..1725440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYF25_RS08330 (NYF25_08330) - 1714376..1715044 (-) 669 WP_000805950.1 uroporphyrinogen-III synthase -
  NYF25_RS08335 (NYF25_08335) hemC 1715066..1715992 (-) 927 WP_259425896.1 hydroxymethylbilane synthase -
  NYF25_RS08340 (NYF25_08340) - 1716034..1716849 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  NYF25_RS08345 (NYF25_08345) hemA 1716871..1718217 (-) 1347 WP_000545451.1 glutamyl-tRNA reductase -
  NYF25_RS08350 (NYF25_08350) yihA 1718434..1719024 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NYF25_RS08355 (NYF25_08355) clpX 1719178..1720440 (-) 1263 WP_000472302.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NYF25_RS08360 (NYF25_08360) tig 1720591..1721892 (-) 1302 WP_000127573.1 trigger factor -
  NYF25_RS08365 (NYF25_08365) - 1721940..1722050 (-) 111 WP_001790560.1 hypothetical protein -
  NYF25_RS08370 (NYF25_08370) - 1722055..1722984 (-) 930 WP_001280018.1 hypothetical protein -
  NYF25_RS08375 (NYF25_08375) - 1723003..1723611 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  NYF25_RS08380 (NYF25_08380) rplT 1723753..1724109 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  NYF25_RS08385 (NYF25_08385) rpmI 1724156..1724356 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  NYF25_RS08390 (NYF25_08390) infC 1724385..1724912 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46297.48 Da        Isoelectric Point: 4.2645

>NTDB_id=625652 NYF25_RS08355 WP_000472302.1 1719178..1720440(-) (clpX) [Staphylococcus aureus strain NRL 02/947]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=625652 NYF25_RS08355 WP_000472302.1 1719178..1720440(-) (clpX) [Staphylococcus aureus strain NRL 02/947]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACCTTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63789

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.917

95

0.636
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531