Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LNB41_RS04900 | Genome accession | NZ_CP086592 |
| Coordinates | 992949..993476 (+) | Length | 175 a.a. |
| NCBI ID | WP_010716891.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain Fac74 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 982285..1021979 | 992949..993476 | within | 0 |
Gene organization within MGE regions
Location: 982285..1021979
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNB41_RS04815 (LNB41_04815) | - | 982285..983421 (-) | 1137 | WP_010712197.1 | site-specific integrase | - |
| LNB41_RS04820 (LNB41_04820) | - | 983546..984130 (-) | 585 | WP_010823488.1 | DUF4352 domain-containing protein | - |
| LNB41_RS04825 (LNB41_04825) | - | 984212..984469 (-) | 258 | Protein_941 | toxin | - |
| LNB41_RS04830 (LNB41_04830) | - | 984497..985234 (-) | 738 | WP_104845043.1 | DUF4950 domain-containing protein | - |
| LNB41_RS04835 (LNB41_04835) | - | 985256..985894 (-) | 639 | WP_010716880.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LNB41_RS04840 (LNB41_04840) | - | 985909..986250 (-) | 342 | WP_010716881.1 | helix-turn-helix domain-containing protein | - |
| LNB41_RS04845 (LNB41_04845) | - | 986495..987454 (+) | 960 | WP_002360751.1 | IS30-like element IS1062 family transposase | - |
| LNB41_RS04850 (LNB41_04850) | - | 987635..987811 (+) | 177 | WP_010716882.1 | helix-turn-helix transcriptional regulator | - |
| LNB41_RS04855 (LNB41_04855) | - | 987825..988163 (+) | 339 | WP_010716883.1 | DUF771 domain-containing protein | - |
| LNB41_RS04860 (LNB41_04860) | - | 988166..988879 (+) | 714 | WP_104670706.1 | Rha family transcriptional regulator | - |
| LNB41_RS04865 (LNB41_04865) | - | 988890..989075 (+) | 186 | WP_002364665.1 | hypothetical protein | - |
| LNB41_RS04870 (LNB41_04870) | - | 989087..989260 (+) | 174 | WP_010716885.1 | hypothetical protein | - |
| LNB41_RS04875 (LNB41_04875) | - | 989461..990204 (+) | 744 | WP_010716887.1 | ERF family protein | - |
| LNB41_RS04880 (LNB41_04880) | - | 990204..991142 (+) | 939 | WP_010716888.1 | DUF1351 domain-containing protein | - |
| LNB41_RS04885 (LNB41_04885) | - | 991139..991780 (+) | 642 | WP_021732904.1 | putative HNHc nuclease | - |
| LNB41_RS04890 (LNB41_04890) | - | 991800..992651 (+) | 852 | WP_029657338.1 | hypothetical protein | - |
| LNB41_RS04895 (LNB41_04895) | - | 992651..992959 (+) | 309 | WP_002381633.1 | MazG-like family protein | - |
| LNB41_RS04900 (LNB41_04900) | ssb | 992949..993476 (+) | 528 | WP_010716891.1 | single-stranded DNA-binding protein | Machinery gene |
| LNB41_RS04905 (LNB41_04905) | - | 993488..993817 (+) | 330 | WP_002381635.1 | hypothetical protein | - |
| LNB41_RS04910 (LNB41_04910) | - | 993837..994043 (+) | 207 | WP_002395701.1 | hypothetical protein | - |
| LNB41_RS04915 (LNB41_04915) | - | 994140..994841 (+) | 702 | WP_229023964.1 | DNA-methyltransferase | - |
| LNB41_RS04920 (LNB41_04920) | - | 994944..995150 (+) | 207 | WP_002395701.1 | hypothetical protein | - |
| LNB41_RS04925 (LNB41_04925) | - | 995247..995987 (+) | 741 | WP_202580005.1 | DNA-methyltransferase | - |
| LNB41_RS04930 (LNB41_04930) | - | 996010..996222 (-) | 213 | WP_010730059.1 | hypothetical protein | - |
| LNB41_RS04935 (LNB41_04935) | - | 996306..996752 (+) | 447 | WP_104670707.1 | YopX family protein | - |
| LNB41_RS04940 (LNB41_04940) | - | 996749..997108 (+) | 360 | WP_010716895.1 | hypothetical protein | - |
| LNB41_RS04945 (LNB41_04945) | - | 997105..997407 (+) | 303 | WP_002393229.1 | hypothetical protein | - |
| LNB41_RS04950 (LNB41_04950) | - | 997419..997586 (+) | 168 | WP_002405636.1 | hypothetical protein | - |
| LNB41_RS04955 (LNB41_04955) | - | 997579..998127 (+) | 549 | WP_104670708.1 | DUF1642 domain-containing protein | - |
| LNB41_RS04960 (LNB41_04960) | - | 998127..998558 (+) | 432 | WP_010716897.1 | ASCH/PUA domain-containing protein | - |
| LNB41_RS04965 (LNB41_04965) | - | 998572..998889 (+) | 318 | WP_010716898.1 | hypothetical protein | - |
| LNB41_RS04970 (LNB41_04970) | - | 998883..999095 (+) | 213 | WP_010716899.1 | hypothetical protein | - |
| LNB41_RS04975 (LNB41_04975) | - | 999096..999515 (+) | 420 | WP_010716900.1 | RinA family phage transcriptional regulator | - |
| LNB41_RS04980 (LNB41_04980) | - | 999789..1000538 (+) | 750 | WP_010716901.1 | hypothetical protein | - |
| LNB41_RS04985 (LNB41_04985) | - | 1000572..1001108 (+) | 537 | WP_010716902.1 | hypothetical protein | - |
| LNB41_RS04990 (LNB41_04990) | terS | 1001161..1001964 (+) | 804 | WP_010716903.1 | phage terminase small subunit | - |
| LNB41_RS04995 (LNB41_04995) | - | 1001936..1003225 (+) | 1290 | WP_025191956.1 | PBSX family phage terminase large subunit | - |
| LNB41_RS05000 (LNB41_05000) | - | 1003238..1004713 (+) | 1476 | WP_010716904.1 | phage portal protein | - |
| LNB41_RS05005 (LNB41_05005) | - | 1004688..1005734 (+) | 1047 | WP_010716905.1 | SPP1 gp7 family phage head morphogenesis protein | - |
| LNB41_RS05010 (LNB41_05010) | - | 1005737..1006057 (+) | 321 | WP_010716906.1 | hypothetical protein | - |
| LNB41_RS05015 (LNB41_05015) | - | 1006276..1006905 (+) | 630 | WP_229023965.1 | DUF4355 domain-containing protein | - |
| LNB41_RS05020 (LNB41_05020) | - | 1006919..1007821 (+) | 903 | WP_104670709.1 | DUF5309 family protein | - |
| LNB41_RS05025 (LNB41_05025) | - | 1007845..1008081 (+) | 237 | WP_002404933.1 | hypothetical protein | - |
| LNB41_RS05030 (LNB41_05030) | - | 1008090..1008434 (+) | 345 | WP_002395886.1 | hypothetical protein | - |
| LNB41_RS05035 (LNB41_05035) | - | 1008431..1008808 (+) | 378 | WP_002404932.1 | hypothetical protein | - |
| LNB41_RS05040 (LNB41_05040) | - | 1008801..1009199 (+) | 399 | WP_002402415.1 | HK97 gp10 family phage protein | - |
| LNB41_RS05045 (LNB41_05045) | - | 1009203..1009577 (+) | 375 | WP_104670710.1 | DUF6838 family protein | - |
| LNB41_RS05050 (LNB41_05050) | - | 1009578..1010420 (+) | 843 | WP_100966702.1 | major tail protein | - |
| LNB41_RS05055 (LNB41_05055) | gpG | 1010473..1010826 (+) | 354 | WP_002364485.1 | phage tail assembly chaperone G | - |
| LNB41_RS05060 (LNB41_05060) | - | 1011075..1013972 (+) | 2898 | WP_181033979.1 | tape measure protein | - |
| LNB41_RS05065 (LNB41_05065) | - | 1013962..1014696 (+) | 735 | WP_104670712.1 | phage tail protein | - |
| LNB41_RS05070 (LNB41_05070) | - | 1014678..1017392 (+) | 2715 | WP_181033978.1 | phage tail spike protein | - |
| LNB41_RS05075 (LNB41_05075) | - | 1017408..1018289 (+) | 882 | WP_104670714.1 | phage baseplate upper protein | - |
| LNB41_RS05080 (LNB41_05080) | - | 1018282..1018878 (+) | 597 | WP_025192304.1 | hypothetical protein | - |
| LNB41_RS05085 (LNB41_05085) | - | 1018875..1019162 (+) | 288 | WP_002365086.1 | collagen-like protein | - |
| LNB41_RS05090 (LNB41_05090) | - | 1019162..1019671 (+) | 510 | WP_010716870.1 | hypothetical protein | - |
| LNB41_RS05095 (LNB41_05095) | - | 1019688..1020062 (+) | 375 | WP_002402192.1 | hypothetical protein | - |
| LNB41_RS05100 (LNB41_05100) | - | 1020062..1020199 (+) | 138 | WP_002399193.1 | XkdX family protein | - |
| LNB41_RS05105 (LNB41_05105) | - | 1020233..1020466 (+) | 234 | WP_002383824.1 | hemolysin XhlA family protein | - |
| LNB41_RS05110 (LNB41_05110) | - | 1020469..1020675 (+) | 207 | WP_010784051.1 | phage holin | - |
| LNB41_RS05115 (LNB41_05115) | - | 1020678..1021979 (+) | 1302 | WP_010828322.1 | LysM peptidoglycan-binding domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19296.09 Da Isoelectric Point: 4.7051
>NTDB_id=625619 LNB41_RS04900 WP_010716891.1 992949..993476(+) (ssb) [Enterococcus faecalis strain Fac74]
MINNVVLVGRLTKDPDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWHKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSVQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWHKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSVQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=625619 LNB41_RS04900 WP_010716891.1 992949..993476(+) (ssb) [Enterococcus faecalis strain Fac74]
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCCTGATTTACGCTACACCGCCAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAATGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCATAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGTCAAAAAG
CACCAATGAGAATAGAAATAGCGTTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCCTGATTTACGCTACACCGCCAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAATGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCATAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGTCAAAAAG
CACCAATGAGAATAGAAATAGCGTTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.551 |
100 |
0.606 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.427 |
100 |
0.594 |