Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LK342_RS10120 Genome accession   NZ_CP086574
Coordinates   2109460..2109855 (-) Length   131 a.a.
NCBI ID   WP_000932697.1    Uniprot ID   A0A7U7PX14
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2104460..2114855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS10095 (LK342_10095) thiE 2105064..2105705 (-) 642 WP_072368963.1 thiamine phosphate synthase -
  LK342_RS10100 (LK342_10100) thiM 2105707..2106498 (-) 792 WP_072292204.1 hydroxyethylthiazole kinase -
  LK342_RS10105 (LK342_10105) thiD 2106482..2107312 (-) 831 WP_001039676.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LK342_RS10110 (LK342_10110) tenA 2107309..2107995 (-) 687 WP_047437277.1 thiaminase II -
  LK342_RS10115 (LK342_10115) sceD 2108376..2109068 (-) 693 WP_031787703.1 lytic transglycosylase SceD -
  LK342_RS10120 (LK342_10120) ssb 2109460..2109855 (-) 396 WP_000932697.1 single-stranded DNA-binding protein Machinery gene
  LK342_RS10125 (LK342_10125) - 2110049..2110489 (+) 441 WP_000846749.1 YwpF-like family protein -
  LK342_RS10130 (LK342_10130) fabZ 2110546..2110986 (-) 441 WP_000447680.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LK342_RS10135 (LK342_10135) murA 2111020..2112285 (-) 1266 WP_000358013.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LK342_RS10140 (LK342_10140) - 2112397..2112630 (-) 234 WP_000384521.1 DUF1146 family protein -
  LK342_RS10145 (LK342_10145) - 2112962..2113366 (-) 405 WP_001094393.1 F0F1 ATP synthase subunit epsilon -
  LK342_RS10150 (LK342_10150) atpD 2113386..2114798 (-) 1413 WP_000511140.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15016.10 Da        Isoelectric Point: 5.2398

>NTDB_id=625600 LK342_RS10120 WP_000932697.1 2109460..2109855(-) (ssb) [Staphylococcus argenteus strain RIVM_M046968]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=625600 LK342_RS10120 WP_000932697.1 2109460..2109855(-) (ssb) [Staphylococcus argenteus strain RIVM_M046968]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PX14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

93.893

100

0.939
  ssb Staphylococcus aureus MW2

93.13

100

0.931