Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LK342_RS04660 Genome accession   NZ_CP086574
Coordinates   991772..992341 (-) Length   189 a.a.
NCBI ID   WP_000287261.1    Uniprot ID   A0A7U7JTQ7
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 986772..997341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS04640 (LK342_04640) - 988275..989633 (+) 1359 WP_047434072.1 TrkH family potassium uptake protein -
  LK342_RS04645 (LK342_04645) - 989772..991280 (+) 1509 WP_047526292.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  LK342_RS04660 (LK342_04660) comK/comK1 991772..992341 (-) 570 WP_000287261.1 competence protein ComK Regulator
  LK342_RS04665 (LK342_04665) - 992551..992769 (+) 219 WP_000876831.1 IDEAL domain-containing protein -
  LK342_RS04670 (LK342_04670) - 992850..993836 (-) 987 WP_047526294.1 lipoate--protein ligase -
  LK342_RS04675 (LK342_04675) - 994031..994207 (+) 177 WP_000214898.1 YkvS family protein -
  LK342_RS04680 (LK342_04680) - 994222..994824 (+) 603 WP_031787353.1 CPBP family glutamic-type intramembrane protease -
  LK342_RS04685 (LK342_04685) - 995836..996120 (+) 285 WP_000790905.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22637.86 Da        Isoelectric Point: 9.6092

>NTDB_id=625575 LK342_RS04660 WP_000287261.1 991772..992341(-) (comK/comK1) [Staphylococcus argenteus strain RIVM_M046968]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQHENIWLNMHYIENIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMVS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=625575 LK342_RS04660 WP_000287261.1 991772..992341(-) (comK/comK1) [Staphylococcus argenteus strain RIVM_M046968]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGATGATCAAAGAAA
TGGTAGTGAAATTATCCGGTTTGATAAAACGCGTATACAAAATCCATTTAAAGTCCAGAAAATCATAGAACGCTCTTGCA
AATTTTATGGTAATACATACCTTGGCAAGAAAGCAGAAACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCCTTATTTCCAACTTATTTTTTCCCAACTCATTCTGACAGACAACACGAAAACATTTGGCTAAATATGCATTA
TATAGAAAATATTAAAGAATTAAAAAATCGTAAATGTAAAGTAACTTTTATTAATAACGAATCAATTATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTACTATATGGTAGATAAACAATCTCGTATGGTTTCT
AAAAATCCCGATCAACCTATAGATTATAATAAAGCCACATTAAACGTATTTGAAGCATTAACACGTTATTCCCTATTCGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JTQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

98.413

100

0.984
  comK/comK1 Staphylococcus aureus N315

98.413

100

0.984