Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LK342_RS04525 Genome accession   NZ_CP086574
Coordinates   961158..962144 (+) Length   328 a.a.
NCBI ID   WP_047526270.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M046968     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 956158..967144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK342_RS04500 (LK342_04500) opp4B 956340..957302 (+) 963 WP_000239821.1 oligopeptide ABC transporter permease -
  LK342_RS04505 (LK342_04505) opp4C 957313..958194 (+) 882 WP_001180303.1 oligopeptide ABC transporter permease -
  LK342_RS04510 (LK342_04510) trpS 958254..959243 (-) 990 WP_047526267.1 tryptophan--tRNA ligase -
  LK342_RS04515 (LK342_04515) spxA 959537..959932 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  LK342_RS04520 (LK342_04520) mecA 960304..961023 (+) 720 WP_001217738.1 adaptor protein MecA -
  LK342_RS04525 (LK342_04525) coiA 961158..962144 (+) 987 WP_047526270.1 competence protein CoiA family protein Machinery gene
  LK342_RS04530 (LK342_04530) pepF 962192..964000 (+) 1809 WP_047429890.1 oligoendopeptidase F -
  LK342_RS04535 (LK342_04535) yjbH 964572..965378 (-) 807 WP_031787339.1 protease adaptor protein YjbH -
  LK342_RS04540 (LK342_04540) - 965401..965766 (-) 366 WP_031787340.1 truncated hemoglobin YjbI -
  LK342_RS04545 (LK342_04545) - 965888..966481 (-) 594 WP_047526272.1 CYTH domain-containing protein -
  LK342_RS04550 (LK342_04550) - 966665..967012 (+) 348 WP_001242105.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38745.42 Da        Isoelectric Point: 9.9357

>NTDB_id=625574 LK342_RS04525 WP_047526270.1 961158..962144(+) (coiA) [Staphylococcus argenteus strain RIVM_M046968]
MLIALNKERQRVSATSAERALQYFCPACGNPVILKRGDKVVSHFAHKHLKEQKCFNNETIKHYKSKLTLAQMLMQQGYQI
EIEPFLKEIRQIPDLIINNKYAFELQLSPIPYRQVLQRTKGLNKLGYKVVWLLDDIQIFQSKVKLSHFQSIFINPITRRF
YTFNLEKQQIFEFKQLQSLGGNNFLATKMEAHIKELFIEIPHNVKSIIKLSKSSIIQYIKYCRWQNSVLQPTLSAMYQLR
LTDEAVVINYGYIFPEQIYIENHPIEWQLHVDLMLNSKDNLTIYDFLDYFKIRNFLIPLESKLVIVKKLINNYLNLNSKR
GNDVQILL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=625574 LK342_RS04525 WP_047526270.1 961158..962144(+) (coiA) [Staphylococcus argenteus strain RIVM_M046968]
ATGTTAATAGCTTTAAATAAAGAAAGACAACGAGTGTCAGCAACATCTGCTGAAAGAGCGTTGCAATATTTTTGTCCAGC
ATGTGGAAATCCGGTTATTTTAAAAAGAGGAGATAAAGTAGTAAGTCATTTTGCACATAAGCATTTAAAAGAACAAAAAT
GTTTTAATAATGAGACGATTAAACATTACAAAAGCAAATTAACATTAGCACAAATGTTAATGCAGCAAGGATATCAAATT
GAAATAGAGCCATTTTTAAAAGAAATTAGACAGATTCCTGATTTAATAATTAACAATAAATATGCATTTGAACTACAATT
ATCACCTATACCGTATAGACAAGTTTTACAACGTACAAAAGGTTTGAATAAATTAGGCTATAAAGTTGTTTGGTTGCTTG
ATGATATACAAATATTTCAAAGTAAGGTGAAATTAAGTCATTTTCAAAGTATTTTTATCAATCCAATTACACGAAGATTT
TATACATTTAATTTAGAGAAACAACAGATTTTTGAATTTAAACAATTACAAAGTTTAGGTGGCAACAATTTTTTGGCGAC
TAAAATGGAAGCACATATTAAAGAATTATTTATTGAGATACCACACAATGTTAAATCAATTATTAAATTATCTAAATCCT
CTATTATTCAATATATCAAATATTGTCGCTGGCAAAACTCGGTATTACAACCAACATTAAGTGCTATGTATCAATTACGG
TTAACAGATGAAGCTGTAGTGATTAATTATGGCTATATTTTCCCAGAACAAATATATATCGAAAATCATCCGATAGAATG
GCAATTACACGTTGATTTAATGTTAAATAGTAAGGATAATCTTACTATTTATGATTTTTTAGATTACTTCAAAATAAGGA
ATTTTTTAATACCATTAGAATCAAAGTTAGTAATTGTGAAAAAACTTATTAACAATTATTTAAATCTTAATTCAAAAAGA
GGTAATGACGTGCAAATTTTGTTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

67.683

100

0.677
  coiA Staphylococcus aureus MW2

67.378

100

0.674