Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LK336_RS13010 | Genome accession | NZ_CP086572 |
| Coordinates | 2704175..2704570 (+) | Length | 131 a.a. |
| NCBI ID | WP_000932697.1 | Uniprot ID | A0A7U7PX14 |
| Organism | Staphylococcus argenteus strain RIVM_M036020 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2699175..2709570
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK336_RS12980 (LK336_12970) | atpD | 2699232..2700644 (+) | 1413 | WP_000511140.1 | F0F1 ATP synthase subunit beta | - |
| LK336_RS12985 (LK336_12975) | - | 2700664..2701068 (+) | 405 | WP_001094393.1 | F0F1 ATP synthase subunit epsilon | - |
| LK336_RS12990 (LK336_12980) | - | 2701400..2701633 (+) | 234 | WP_000384521.1 | DUF1146 family protein | - |
| LK336_RS12995 (LK336_12985) | murA | 2701745..2703010 (+) | 1266 | WP_000358013.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| LK336_RS13000 (LK336_12990) | fabZ | 2703044..2703484 (+) | 441 | WP_000447680.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| LK336_RS13005 (LK336_12995) | - | 2703541..2703981 (-) | 441 | WP_000846749.1 | YwpF-like family protein | - |
| LK336_RS13010 (LK336_13000) | ssb | 2704175..2704570 (+) | 396 | WP_000932697.1 | single-stranded DNA-binding protein | Machinery gene |
| LK336_RS13015 (LK336_13005) | sceD | 2704962..2705654 (+) | 693 | WP_031787703.1 | lytic transglycosylase SceD | - |
| LK336_RS13020 (LK336_13010) | tenA | 2706034..2706720 (+) | 687 | WP_031787702.1 | thiaminase II | - |
| LK336_RS13025 (LK336_13015) | thiD | 2706717..2707547 (+) | 831 | WP_031787701.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| LK336_RS13030 (LK336_13020) | thiM | 2707531..2708322 (+) | 792 | WP_031787700.1 | hydroxyethylthiazole kinase | - |
| LK336_RS13035 (LK336_13025) | thiE | 2708324..2708965 (+) | 642 | WP_031787699.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15016.10 Da Isoelectric Point: 5.2398
>NTDB_id=625559 LK336_RS13010 WP_000932697.1 2704175..2704570(+) (ssb) [Staphylococcus argenteus strain RIVM_M036020]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=625559 LK336_RS13010 WP_000932697.1 2704175..2704570(+) (ssb) [Staphylococcus argenteus strain RIVM_M036020]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
93.893 |
100 |
0.939 |
| ssb | Staphylococcus aureus MW2 |
93.13 |
100 |
0.931 |