Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LK336_RS04975 Genome accession   NZ_CP086572
Coordinates   1037041..1038027 (-) Length   328 a.a.
NCBI ID   WP_031787337.1    Uniprot ID   A0A7U7PY59
Organism   Staphylococcus argenteus strain RIVM_M036020     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1032041..1043027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK336_RS04950 (LK336_04945) - 1032174..1032521 (-) 348 WP_001242105.1 hypothetical protein -
  LK336_RS04955 (LK336_04950) - 1032705..1033298 (+) 594 WP_031787341.1 CYTH domain-containing protein -
  LK336_RS04960 (LK336_04955) - 1033420..1033785 (+) 366 WP_031787340.1 truncated hemoglobin YjbI -
  LK336_RS04965 (LK336_04960) yjbH 1033808..1034614 (+) 807 WP_031787339.1 protease adaptor protein YjbH -
  LK336_RS04970 (LK336_04965) pepF 1035185..1036993 (-) 1809 WP_031787338.1 oligoendopeptidase F -
  LK336_RS04975 (LK336_04970) coiA 1037041..1038027 (-) 987 WP_031787337.1 competence protein CoiA family protein Machinery gene
  LK336_RS04980 (LK336_04975) mecA 1038162..1038881 (-) 720 WP_031787336.1 adaptor protein MecA -
  LK336_RS04985 (LK336_04980) spxA 1039253..1039648 (-) 396 WP_031787335.1 transcriptional regulator SpxA -
  LK336_RS04990 (LK336_04985) trpS 1039942..1040931 (+) 990 WP_031787334.1 tryptophan--tRNA ligase -
  LK336_RS04995 (LK336_04990) - 1041008..1042630 (-) 1623 WP_031787333.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38727.32 Da        Isoelectric Point: 9.8203

>NTDB_id=625539 LK336_RS04975 WP_031787337.1 1037041..1038027(-) (coiA) [Staphylococcus argenteus strain RIVM_M036020]
MLIALNKERQRVSATSAERALQYFCPACGNPVILKRGHKVVSHFAHKHLTEQKCFNNETIKHYKSKLTLAQMLMQQGYQV
EIEPFLKEIRQIPDLIINNKYAFELQLSPIPYRQVLQRTEGLNKLGYKVVWLLDDIQIFQSKVKLSHFQSIFINPITRRF
YTFNLEKQQIFEFKQLQSLGGNNFLATKMEAHIKELFIEIPHNVKSIIKLSKSSIIQYIKYCRWQNSVLQPTLSAMYQLR
LTDEAVVINYGYIFPEQIYIENHPIEWQLHVDLMLNSKDNLTIYDFLDYFKIRNFLIPLESKLVIVKKLINNYLNLNSKR
GNDVQILL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=625539 LK336_RS04975 WP_031787337.1 1037041..1038027(-) (coiA) [Staphylococcus argenteus strain RIVM_M036020]
ATGTTAATAGCTTTAAATAAAGAAAGACAACGAGTGTCAGCAACATCTGCTGAAAGAGCGTTGCAATATTTTTGTCCAGC
ATGTGGAAATCCGGTTATTTTAAAAAGGGGACATAAAGTAGTAAGTCATTTTGCACATAAGCATTTAACAGAACAAAAAT
GTTTTAATAATGAGACGATTAAACATTACAAAAGCAAATTAACATTAGCACAAATGTTAATGCAGCAAGGTTATCAAGTT
GAAATAGAGCCATTTTTAAAAGAAATTAGACAGATTCCTGATTTAATAATTAACAATAAATATGCATTTGAACTACAATT
ATCACCTATACCGTATAGACAAGTTTTACAACGTACAGAAGGTTTGAATAAATTAGGTTATAAAGTTGTTTGGTTGCTTG
ATGATATACAAATATTTCAAAGTAAGGTGAAATTAAGTCATTTTCAAAGTATTTTTATCAATCCAATTACACGAAGATTC
TATACATTTAATTTAGAGAAACAACAGATTTTTGAATTTAAACAATTACAAAGTTTAGGTGGCAACAATTTTTTGGCGAC
TAAAATGGAAGCACATATTAAAGAATTATTTATTGAGATACCACACAATGTTAAATCAATTATTAAATTATCTAAATCCT
CTATTATTCAATATATCAAATATTGTCGCTGGCAAAACTCGGTTTTACAACCAACATTAAGTGCTATGTATCAATTACGG
TTAACAGATGAAGCAGTAGTGATTAATTATGGCTATATTTTCCCAGAACAAATATATATCGAAAATCATCCGATAGAATG
GCAATTACACGTTGATTTAATGTTAAATAGTAAGGATAATCTCACTATTTATGATTTTTTAGATTACTTCAAAATAAGGA
ATTTTTTAATACCATTAGAATCAAAGTTAGTAATTGTGAAAAAACTTATTAACAATTATTTAAATCTTAATTCAAAAAGA
GGTAATGACGTGCAAATTTTGTTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PY59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

68.293

100

0.683
  coiA Staphylococcus aureus MW2

67.988

100

0.68