Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LK341_RS12700 | Genome accession | NZ_CP086570 |
| Coordinates | 2663403..2663798 (+) | Length | 131 a.a. |
| NCBI ID | WP_000932697.1 | Uniprot ID | A0A7U7PX14 |
| Organism | Staphylococcus argenteus strain RIVM_M020832 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2658403..2668798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK341_RS12670 (LK341_12660) | atpD | 2658460..2659872 (+) | 1413 | WP_000511140.1 | F0F1 ATP synthase subunit beta | - |
| LK341_RS12675 (LK341_12665) | - | 2659892..2660296 (+) | 405 | WP_001094393.1 | F0F1 ATP synthase subunit epsilon | - |
| LK341_RS12680 (LK341_12670) | - | 2660628..2660861 (+) | 234 | WP_000384521.1 | DUF1146 family protein | - |
| LK341_RS12685 (LK341_12675) | murA | 2660973..2662238 (+) | 1266 | WP_000358013.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| LK341_RS12690 (LK341_12680) | fabZ | 2662272..2662712 (+) | 441 | WP_000447680.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| LK341_RS12695 (LK341_12685) | - | 2662769..2663209 (-) | 441 | WP_000846749.1 | YwpF-like family protein | - |
| LK341_RS12700 (LK341_12690) | ssb | 2663403..2663798 (+) | 396 | WP_000932697.1 | single-stranded DNA-binding protein | Machinery gene |
| LK341_RS12705 (LK341_12695) | sceD | 2664190..2664882 (+) | 693 | WP_031787703.1 | lytic transglycosylase SceD | - |
| LK341_RS12710 (LK341_12700) | tenA | 2665262..2665948 (+) | 687 | WP_031787702.1 | thiaminase II | - |
| LK341_RS12715 (LK341_12705) | thiD | 2665945..2666775 (+) | 831 | WP_031787701.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| LK341_RS12720 (LK341_12710) | thiM | 2666759..2667550 (+) | 792 | WP_031787700.1 | hydroxyethylthiazole kinase | - |
| LK341_RS12725 (LK341_12715) | thiE | 2667552..2668193 (+) | 642 | WP_031787699.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15016.10 Da Isoelectric Point: 5.2398
>NTDB_id=625513 LK341_RS12700 WP_000932697.1 2663403..2663798(+) (ssb) [Staphylococcus argenteus strain RIVM_M020832]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=625513 LK341_RS12700 WP_000932697.1 2663403..2663798(+) (ssb) [Staphylococcus argenteus strain RIVM_M020832]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
93.893 |
100 |
0.939 |
| ssb | Staphylococcus aureus MW2 |
93.13 |
100 |
0.931 |