Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LK341_RS02035 Genome accession   NZ_CP086570
Coordinates   388399..389100 (+) Length   233 a.a.
NCBI ID   WP_072324129.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain RIVM_M020832     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383399..394100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK341_RS02000 (LK341_02000) yqeH 383926..385026 (+) 1101 WP_031787285.1 ribosome biogenesis GTPase YqeH -
  LK341_RS02005 (LK341_02005) aroE 385039..385845 (+) 807 WP_031787284.1 shikimate dehydrogenase -
  LK341_RS02010 (LK341_02010) yhbY 385850..386140 (+) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  LK341_RS02015 (LK341_02015) - 386143..386712 (+) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  LK341_RS02020 (LK341_02020) yqeK 386702..387286 (+) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LK341_RS02025 (LK341_02025) rsfS 387287..387640 (+) 354 WP_001088023.1 ribosome silencing factor -
  LK341_RS02030 (LK341_02030) - 387643..388359 (+) 717 WP_031787282.1 class I SAM-dependent methyltransferase -
  LK341_RS02035 (LK341_02035) comEA 388399..389100 (+) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  LK341_RS02040 (LK341_02040) - 389192..389653 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LK341_RS02045 (LK341_02045) comEC 389658..391859 (+) 2202 WP_031787280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK341_RS02050 (LK341_02050) holA 391916..392890 (+) 975 WP_001282558.1 DNA polymerase III subunit delta -
  LK341_RS02055 (LK341_02055) rpsT 392940..393191 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26367.06 Da        Isoelectric Point: 9.7027

>NTDB_id=625479 LK341_RS02035 WP_072324129.1 388399..389100(+) (comEA) [Staphylococcus argenteus strain RIVM_M020832]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHTKN
GNTKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=625479 LK341_RS02035 WP_072324129.1 388399..389100(+) (comEA) [Staphylococcus argenteus strain RIVM_M020832]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACACAAAAAAT
GGGAACACAAAAAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.81

99.571

0.914
  comEA Staphylococcus aureus N315

91.81

99.571

0.914