Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NYR92_RS20050 Genome accession   NZ_CP103783
Coordinates   3808702..3809076 (-) Length   124 a.a.
NCBI ID   WP_003227621.1    Uniprot ID   A0A9W5LLN9
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3803702..3814076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR92_RS20025 (NYR92_20025) - 3803866..3804027 (-) 162 WP_003227632.1 hypothetical protein -
  NYR92_RS20030 (NYR92_20030) glpX 3804242..3805207 (-) 966 WP_003242962.1 class II fructose-bisphosphatase -
  NYR92_RS20035 (NYR92_20035) murAB 3805238..3806527 (-) 1290 WP_003227628.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NYR92_RS20040 (NYR92_20040) fsa 3806906..3807544 (-) 639 WP_003227626.1 fructose-6-phosphate aldolase -
  NYR92_RS20045 (NYR92_20045) fbaA 3807664..3808521 (-) 858 WP_003243339.1 class II fructose-bisphosphate aldolase -
  NYR92_RS20050 (NYR92_20050) letA 3808702..3809076 (-) 375 WP_003227621.1 sporulation initiation phosphotransferase Spo0F Regulator
  NYR92_RS20055 (NYR92_20055) ywjG 3809242..3809763 (+) 522 WP_003242809.1 DUF2529 domain-containing protein -
  NYR92_RS20060 (NYR92_20060) pyrG 3809845..3811452 (-) 1608 WP_003227612.1 glutamine hydrolyzing CTP synthase -
  NYR92_RS20065 (NYR92_20065) rpoE 3811694..3812215 (-) 522 WP_003243661.1 DNA-directed RNA polymerase subunit delta -
  NYR92_RS20070 (NYR92_20070) acdA 3812398..3813537 (-) 1140 Protein_3900 acyl-CoA dehydrogenase AcdA -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14227.68 Da        Isoelectric Point: 4.6400

>NTDB_id=625233 NYR92_RS20050 WP_003227621.1 3808702..3809076(-) (letA) [Bacillus subtilis subsp. subtilis str. 168]
MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVII
MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSN

Nucleotide


Download         Length: 375 bp        

>NTDB_id=625233 NYR92_RS20050 WP_003227621.1 3808702..3809076(-) (letA) [Bacillus subtilis subsp. subtilis str. 168]
ATGATGAATGAAAAAATTTTAATCGTTGATGATCAATACGGCATTCGTATTTTGCTAAATGAAGTGTTCAATAAAGAAGG
CTACCAGACGTTTCAGGCTGCGAACGGCCTGCAGGCGCTTGACATTGTGACAAAAGAACGGCCCGACCTTGTGCTGTTGG
ACATGAAAATTCCCGGCATGGACGGAATCGAAATCTTAAAACGGATGAAGGTCATTGACGAAAACATCCGGGTCATTATC
ATGACGGCATACGGAGAGCTCGACATGATCCAGGAATCGAAGGAATTGGGCGCTCTGACGCACTTTGCCAAGCCGTTTGA
CATCGACGAAATCAGAGACGCCGTCAAAAAATATCTGCCCCTGAAGTCTAACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LLN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.462

94.355

0.363
  letA Legionella pneumophila strain ERS1305867

38.462

94.355

0.363