Detailed information NTG0062523

Bioinformatically predicted

Overview

• Name: degU
• Type: Regulator
• Locus tag: N288_RS20515
• Genome accession: NC_022524
• Coordinates: 4059944..4060627 (-)
• Length: 227 a.a.
• NCBI ID: WP_009792967.1
• Uniprot ID: U5LFT5
• Organism: Bacillus infantis NRRL B-14911
• Function: activation of comK (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	4058631..4059770	4059944..4060627	flank	174

Gene organization within MGE regions

Location: 4058631..4060627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N288_RS20510 (N288_22110)	-	4058631..4059770 (+)	1140	WP_022544409.1	IS110 family transposase	-
N288_RS20515 (N288_22115)	degU	4059944..4060627 (-)	684	WP_009792967.1	response regulator	Regulator

Sequence

Protein

• Length: 227 a.a.
• Molecular weight: 25383.89 Da
• Isoelectric Point: 4.9317

>NTDB_id=62523 N288_RS20515 WP_009792967.1 4059944..4060627(-) (degU) [Bacillus infantis NRRL B-14911]
MTTKIVIIDDHQLFREGVKRILDFEKTFEVVAEGDDGNEALGLVEEYDPDVVIMDINMPTINGVEATKQLVEKYPDAKVI
ILSIHDDENYVTHALKTGASGYLLKEMDADALVEAVKVVADGGSYLHPKVTHNLVKEYRRLASDENGSSEGYTQVEIRRP
LHLLTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide

• Length: 684 bp

>NTDB_id=62523 N288_RS20515 WP_009792967.1 4059944..4060627(-) (degU) [Bacillus infantis NRRL B-14911]
TTGACTACAAAAATCGTCATTATCGATGATCATCAGTTGTTTAGAGAAGGGGTTAAACGTATTCTTGATTTTGAAAAGAC
ATTTGAAGTTGTTGCAGAAGGCGATGACGGAAATGAAGCGCTGGGTCTTGTTGAAGAATATGACCCGGATGTCGTAATCA
TGGATATCAACATGCCGACAATCAACGGTGTGGAAGCGACCAAGCAATTAGTCGAAAAATATCCGGATGCAAAAGTCATC
ATCCTTTCCATCCATGATGATGAAAACTATGTAACACATGCGCTGAAAACGGGAGCGAGCGGCTATCTGCTGAAGGAAAT
GGATGCCGACGCACTTGTTGAAGCGGTCAAAGTGGTGGCTGATGGAGGCTCTTACCTGCATCCAAAGGTAACCCATAATC
TCGTCAAAGAATACCGCCGCCTGGCATCTGATGAAAATGGCAGCAGCGAAGGATACACACAAGTTGAAATCCGCCGCCCA
CTGCATCTGCTGACACGCCGGGAATGCGAAGTCCTTCAGCTCCTTGCTGACGGAAAAAGCAACCGCGGCATCGGTGAAGC
ATTGTTCATCAGTGAAAAAACGGTTAAGAACCATGTGAGTAATATCCTGCAGAAAATGAATGTGAATGACCGCACTCAGG
CAGTTGTTGTAGCCATCAAGAACGGCTGGGTTGAAGTGAGATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (163-218)

• Response regulator receiver domain (Response_reg) (5-117)

3D structure

• AlphaFold DB: U5LFT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degU	Bacillus subtilis subsp. subtilis str. 168	84.375	98.678	0.833
vraR	Staphylococcus aureus N315	38.222	99.119	0.379