Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N288_RS15600 Genome accession   NC_022524
Coordinates   3079847..3080464 (+) Length   205 a.a.
NCBI ID   WP_269147768.1    Uniprot ID   -
Organism   Bacillus infantis NRRL B-14911     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3074847..3085464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS15570 (N288_16795) - 3075309..3076172 (-) 864 WP_009791244.1 ABC transporter permease subunit -
  N288_RS24775 (N288_16800) - 3076324..3076869 (-) 546 WP_009791245.1 YppG family protein -
  N288_RS15580 (N288_16805) - 3077060..3077266 (+) 207 WP_022544120.1 YppF family protein -
  N288_RS15585 (N288_16810) - 3077350..3077718 (-) 369 WP_022544121.1 YppE family protein -
  N288_RS15590 (N288_16815) - 3077808..3078074 (-) 267 WP_009791248.1 hypothetical protein -
  N288_RS15595 (N288_16825) - 3078727..3079713 (-) 987 WP_009791250.1 DUF2515 domain-containing protein -
  N288_RS15600 (N288_16830) recU 3079847..3080464 (+) 618 WP_269147768.1 Holliday junction resolvase RecU Machinery gene
  N288_RS15605 (N288_16835) - 3080499..3083261 (+) 2763 WP_022544124.1 penicillin-binding protein 1A -
  N288_RS15610 (N288_16840) - 3083300..3083830 (-) 531 WP_022544125.1 YpoC family protein -
  N288_RS15615 (N288_16845) nth 3083830..3084477 (-) 648 WP_009791255.1 endonuclease III -
  N288_RS15620 (N288_16850) - 3084623..3085330 (-) 708 WP_009791256.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23905.37 Da        Isoelectric Point: 9.8388

>NTDB_id=62508 N288_RS15600 WP_269147768.1 3079847..3080464(+) (recU) [Bacillus infantis NRRL B-14911]
MQLNFHYPNGRKYLPQKAAAAPVKKEKKWTYSNRGMTLEDDINETNAFYLERGLAVIHKKPTPVQIVNVDYPKRSAAVIK
EAYFKQASTTDYNGLYKGRYIDFEAKETKNSTSFPLKNFHAHQISHMRRIVAQGGICFVLLRFSESEEIFLLEARSLFPF
WERMENGGRKSIAKTEIEENGHRIQLGFQPRIDYIKVIDYLYNLT

Nucleotide


Download         Length: 618 bp        

>NTDB_id=62508 N288_RS15600 WP_269147768.1 3079847..3080464(+) (recU) [Bacillus infantis NRRL B-14911]
ATGCAATTGAATTTCCACTACCCAAACGGACGAAAGTATTTGCCGCAAAAGGCGGCTGCTGCGCCTGTGAAAAAGGAGAA
AAAATGGACATATTCCAACAGGGGGATGACACTAGAGGATGATATAAATGAAACAAATGCTTTTTACCTGGAAAGGGGGC
TGGCTGTAATCCATAAAAAGCCCACGCCAGTCCAGATTGTGAATGTTGACTATCCTAAAAGAAGTGCTGCGGTTATTAAG
GAGGCTTATTTCAAGCAAGCCTCAACCACAGATTATAATGGCCTTTATAAAGGAAGATATATTGATTTTGAAGCAAAGGA
AACGAAGAATAGCACTTCTTTTCCTCTTAAGAACTTCCATGCCCACCAGATATCCCATATGCGCAGGATAGTTGCCCAGG
GGGGGATCTGCTTTGTGCTGCTCCGTTTCTCAGAGAGCGAAGAAATCTTCCTTTTAGAAGCCCGCTCCCTTTTCCCTTTT
TGGGAGAGGATGGAGAATGGCGGACGCAAATCCATTGCGAAAACGGAAATAGAAGAAAATGGCCATAGGATCCAGCTTGG
CTTCCAGCCCAGGATTGACTATATTAAAGTAATAGATTATCTTTATAATCTTACATGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(34-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

64.286

95.61

0.615

Multiple sequence alignment