Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N288_RS07155 Genome accession   NC_022524
Coordinates   1393887..1395716 (+) Length   609 a.a.
NCBI ID   WP_022543611.1    Uniprot ID   U5L9Q5
Organism   Bacillus infantis NRRL B-14911     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388887..1400716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS07135 (N288_07655) spxA 1389379..1389774 (+) 396 WP_009794105.1 transcriptional regulator SpxA -
  N288_RS07140 (N288_07660) mecA 1390129..1390797 (+) 669 WP_009794106.1 adaptor protein MecA Regulator
  N288_RS07145 (N288_07665) cls 1390885..1392402 (+) 1518 WP_009794107.1 cardiolipin synthase -
  N288_RS07150 (N288_07675) - 1392538..1393782 (+) 1245 WP_009794109.1 competence protein CoiA -
  N288_RS07155 (N288_07680) pepF 1393887..1395716 (+) 1830 WP_022543611.1 oligoendopeptidase F Regulator
  N288_RS07160 (N288_07685) - 1396396..1396575 (-) 180 WP_009794111.1 hypothetical protein -
  N288_RS07165 (N288_07690) - 1396825..1397703 (-) 879 WP_009794112.1 ClpXP adapter SpxH family protein -
  N288_RS07170 (N288_07695) - 1397700..1398107 (-) 408 WP_009794113.1 hypothetical protein -
  N288_RS07175 (N288_07705) - 1398395..1399015 (-) 621 WP_009794115.1 lytic transglycosylase domain-containing protein -
  N288_RS07180 (N288_07710) - 1399056..1399652 (-) 597 WP_009794116.1 CYTH domain-containing protein -
  N288_RS07185 (N288_07715) - 1399775..1400137 (+) 363 WP_022543612.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70443.68 Da        Isoelectric Point: 4.6681

>NTDB_id=62498 N288_RS07155 WP_022543611.1 1393887..1395716(+) (pepF) [Bacillus infantis NRRL B-14911]
MANETAVKKLPSRSEIKPEDTWRLEDIFSTDDAWEKEFQEVKQLLPDAGGFQGKLGDSADKLYEALQYQDHLLERLGRLY
SYAHMRYDQDTTNSFYQGLDDRIKNLYSQAASSLAYIVPEILAIDEEKISSFLDEKEELRLYKHSLEEINLQRPHVLSAE
AEALLAQASEVLDAPGNTFGMLNNADLEFPSIKDENGEEVEVTHGRYIRFLESDDQRVRRDAFKAVYDTYGKFKNTFSST
LSSNVKKDNFYARVRNYDSARHAALSDNNIPESVYENLVNTVNDNLHLLHRYIKLRKEVLGLEKLHMYDLFTPLVKDVKM
EIPYDEAKDYVLKGLEPLGEEYLSVLKEGFENRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDQKRLYLLNHYLEGFRGTVFRQTMFAEFEHQIHQKAQ
NNEALTAEALTQDYYELNKKYFGEEDIIIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVERYINF
LKAGSSDYPIEVLKKAGVDMTSPAPIADACKVFEEKLNEMEELLNRVKQ

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=62498 N288_RS07155 WP_022543611.1 1393887..1395716(+) (pepF) [Bacillus infantis NRRL B-14911]
ATGGCAAATGAAACTGCGGTAAAGAAATTGCCTTCAAGAAGTGAAATAAAGCCGGAAGATACATGGAGGCTTGAAGATAT
TTTTTCAACAGACGATGCCTGGGAAAAAGAATTCCAGGAAGTGAAGCAGCTGCTTCCTGATGCGGGCGGGTTCCAGGGCA
AGTTGGGGGACAGCGCAGACAAGCTGTATGAAGCGCTTCAATACCAGGATCACCTCCTTGAAAGGCTGGGCAGGCTCTAC
TCATATGCCCATATGAGATATGACCAGGATACGACCAATTCCTTTTACCAGGGACTGGATGACCGCATTAAAAATCTGTA
TTCCCAGGCAGCGAGCAGCCTTGCTTATATTGTGCCAGAGATTCTGGCAATCGATGAAGAGAAGATCAGCAGCTTCCTTG
ATGAAAAAGAAGAGCTAAGACTCTATAAGCATTCTTTGGAGGAAATCAACCTTCAAAGGCCGCACGTATTATCTGCAGAA
GCAGAAGCACTGCTGGCACAGGCTTCAGAAGTCCTTGATGCACCAGGGAACACATTTGGCATGCTGAATAATGCCGATCT
TGAATTTCCATCCATTAAAGATGAAAACGGGGAAGAAGTCGAGGTTACCCATGGCCGCTATATCCGTTTCCTGGAGAGTG
ACGATCAGCGTGTCCGCAGGGATGCCTTTAAAGCGGTATATGATACTTATGGTAAATTCAAGAATACTTTTTCAAGCACC
TTGAGCAGCAATGTCAAAAAAGATAATTTCTATGCGCGTGTCAGGAATTATGATTCTGCGCGCCATGCTGCACTTTCGGA
TAATAATATCCCTGAAAGTGTCTATGAAAATCTGGTCAATACGGTCAATGACAACCTCCATCTTCTCCACCGCTACATTA
AGCTGAGAAAAGAGGTCCTGGGCCTTGAAAAGCTTCATATGTATGATCTCTTCACACCTCTTGTCAAAGATGTGAAGATG
GAAATTCCTTATGATGAAGCAAAGGATTATGTACTAAAAGGACTGGAGCCGCTGGGAGAGGAATATCTTTCAGTATTAAA
GGAAGGGTTTGAAAACCGCTGGGTCGATGTCCATGAGAATAAAGGAAAAAGAAGCGGGGCTTACTCTTCAGGTGCATATG
GCACAAATCCATATATTCTGATGAACTGGCAGGACAATGTGAACAATCTGTTCACCCTTGCGCATGAATTCGGGCATTCT
GTCCACAGCTACTACACAAGAAAAACGCAGCCATATCCTTACGGAAATTATTCAATCTTTGTGGCAGAGGTAGCTTCCAC
ATGCAATGAAGCCCTCCTTAACGACTATCTGCTGAAAACGATTGATGATGACCAAAAAAGGCTTTATCTGCTGAATCATT
ATTTAGAAGGGTTCCGGGGCACGGTGTTCCGCCAGACCATGTTCGCTGAATTTGAACATCAGATCCACCAGAAAGCCCAA
AATAATGAGGCATTAACAGCAGAGGCGCTGACACAGGATTATTATGAGCTTAATAAAAAGTATTTCGGCGAAGAAGATAT
CATCATCGACGAGGAAATCGGGCTGGAATGGTCCCGGATCCCTCATTTCTATTACAATTACTATGTTTATCAATATGCTA
CAGGCTTCAGCGCCGCAACTGCACTAAGCAAGCAGATCCTCGAAGAAGGTGAGCCGGCAGTCGAAAGGTATATCAACTTC
CTGAAAGCAGGAAGCTCGGATTACCCGATCGAAGTGCTGAAAAAAGCGGGTGTTGACATGACAAGCCCTGCTCCGATTGC
AGATGCCTGCAAGGTATTCGAGGAGAAGCTGAACGAGATGGAAGAACTCTTGAACAGGGTTAAGCAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5L9Q5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.581

98.03

0.486

Multiple sequence alignment