Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   N288_RS07025 Genome accession   NC_022524
Coordinates   1366151..1367113 (+) Length   320 a.a.
NCBI ID   WP_009794081.1    Uniprot ID   -
Organism   Bacillus infantis NRRL B-14911     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1361151..1372113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS07010 (N288_07525) - 1363795..1363986 (-) 192 WP_022543604.1 YjzD family protein -
  N288_RS07015 (N288_07530) - 1364179..1364916 (+) 738 WP_022543605.1 hydrolase -
  N288_RS07020 (N288_07535) - 1365127..1365933 (+) 807 WP_009794079.1 NAD(P)-dependent oxidoreductase -
  N288_RS07025 (N288_07545) med 1366151..1367113 (+) 963 WP_009794081.1 BMP family ABC transporter substrate-binding protein Regulator
  N288_RS07030 (N288_07550) comZ 1367135..1367326 (+) 192 WP_009794082.1 ComZ family protein Regulator
  N288_RS07035 (N288_07555) - 1367404..1367754 (-) 351 WP_009794083.1 hypothetical protein -
  N288_RS07040 (N288_07560) - 1367981..1368919 (+) 939 WP_009794084.1 beta-ketoacyl-ACP synthase III -
  N288_RS07045 (N288_07565) fabF 1369001..1370242 (+) 1242 WP_009794085.1 beta-ketoacyl-ACP synthase II -
  N288_RS07050 (N288_07570) - 1370389..1371165 (+) 777 WP_009794086.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35803.12 Da        Isoelectric Point: 4.1813

>NTDB_id=62493 N288_RS07025 WP_009794081.1 1366151..1367113(+) (med) [Bacillus infantis NRRL B-14911]
MLRFVKFISPILLLLLVLSSCGQASPRGELKKAGLLVPDTINDQVWGTKGYKGMLKIQSKFDVDVFYKEGMNSLPVVERA
VREYAQKGVNLIFGHGNEYALYFNEISDEYPDIHFVSFNGDANNENTTSLNFEGYAMGYFAGMLAAEMSETNKVGVMAAF
EWQPEVEGFYEGAIYQNEDTEVEIRYVGEWDNEQRALELLDVMARNHSDVIYPAGDGFNVPVIEKVKELGLYAIGYISDQ
SDLGESTVLTSTIQHVDALYELVAERMNNGELKSGNLSFDFDDGVISLGKYSPDVDPNYRDELNSSIERYKETGKLPGQS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=62493 N288_RS07025 WP_009794081.1 1366151..1367113(+) (med) [Bacillus infantis NRRL B-14911]
ATGCTCCGTTTTGTGAAATTCATAAGCCCGATTCTGCTGCTCCTTCTGGTGCTGTCGTCATGCGGACAAGCTTCTCCCCG
CGGAGAGCTGAAGAAAGCAGGGCTGCTGGTGCCCGATACGATCAATGACCAGGTCTGGGGCACGAAAGGCTATAAAGGGA
TGCTGAAAATCCAGTCCAAATTCGATGTGGATGTATTCTATAAAGAAGGAATGAACTCTCTTCCCGTTGTTGAGCGTGCT
GTAAGGGAGTACGCCCAGAAGGGGGTAAACCTTATTTTTGGCCACGGAAACGAGTACGCCTTATATTTCAATGAAATTTC
GGATGAATACCCTGACATCCATTTTGTCAGCTTTAATGGCGATGCCAATAATGAGAACACCACCAGCTTGAATTTTGAAG
GGTATGCTATGGGTTATTTTGCAGGGATGCTTGCGGCAGAAATGTCAGAAACCAATAAAGTTGGAGTGATGGCAGCCTTT
GAATGGCAGCCTGAGGTCGAGGGTTTTTATGAGGGAGCCATCTACCAGAATGAAGATACAGAGGTGGAGATACGCTATGT
CGGAGAATGGGATAATGAACAGAGGGCCCTGGAGCTTCTGGATGTCATGGCCAGGAATCATTCTGATGTGATTTACCCTG
CCGGCGACGGCTTTAATGTGCCTGTGATCGAAAAAGTAAAAGAACTGGGTCTGTATGCGATCGGCTATATATCCGACCAG
TCAGACCTCGGGGAATCGACCGTCCTTACGAGTACGATCCAGCATGTAGATGCACTTTATGAGCTGGTAGCTGAAAGGAT
GAATAATGGGGAGCTTAAATCGGGGAATCTGTCATTTGATTTTGATGATGGTGTGATTTCGCTTGGAAAATACAGCCCGG
ATGTTGACCCAAATTATCGGGATGAGCTAAACTCATCTATTGAAAGGTATAAAGAGACAGGCAAATTGCCTGGCCAAAGT
TGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.117

95.938

0.5

Multiple sequence alignment