Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FNL60_RS05735 Genome accession   NZ_AP019720
Coordinates   1111678..1112640 (-) Length   320 a.a.
NCBI ID   WP_002262859.1    Uniprot ID   Q8DUE0
Organism   Streptococcus mutans strain NBRC 13955     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106678..1117640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL60_RS05705 (SM3g_10490) dprA 1107481..1108323 (-) 843 WP_002262865.1 DNA-processing protein DprA Machinery gene
  FNL60_RS05715 (SM3g_10500) - 1108490..1108771 (-) 282 WP_002262863.1 hypothetical protein -
  FNL60_RS05720 (SM3g_10510) - 1108843..1109859 (-) 1017 WP_002262862.1 siderophore ABC transporter substrate-binding protein -
  FNL60_RS05725 (SM3g_10520) - 1109907..1110713 (-) 807 WP_002262861.1 ABC transporter ATP-binding protein -
  FNL60_RS05730 (SM3g_10530) - 1110710..1111681 (-) 972 WP_002262860.1 iron chelate uptake ABC transporter family permease subunit -
  FNL60_RS05735 (SM3g_10540) ceuB 1111678..1112640 (-) 963 WP_002262859.1 ABC transporter permease Machinery gene
  FNL60_RS05740 (SM3g_10550) - 1112814..1113596 (-) 783 WP_002262858.1 ribonuclease HII -
  FNL60_RS05745 (SM3g_10560) ylqF 1113583..1114434 (-) 852 WP_002262857.1 ribosome biogenesis GTPase YlqF -
  FNL60_RS05750 (SM3g_10570) - 1114631..1115596 (-) 966 WP_002262856.1 hypothetical protein -
  FNL60_RS05755 (SM3g_10580) - 1115881..1116219 (-) 339 WP_002262855.1 ATP cone domain-containing protein -
  FNL60_RS05760 (SM3g_10590) dapA 1116527..1117408 (-) 882 WP_002262854.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34993.26 Da        Isoelectric Point: 9.8764

>NTDB_id=62492 FNL60_RS05735 WP_002262859.1 1111678..1112640(-) (ceuB) [Streptococcus mutans strain NBRC 13955]
MKKVLTVPVLGAAAVFLSLVSIFIGVKSLSLFELGSLDDSQLNILLSSRIPRTVSILIAGSSLAVCGLIMQQLTQNKFVS
PTTAGTMDWAKLGVVVTIILFSKSSLLLQLIISSVFVIFGSLFFIYLLKVIKFKDDVFIPLVGLMLGKVVSAISTFLGVQ
FQILQSVNSWLEGHFSIMTSHRYEILFLVLPCMVLIYLYAHQFTIAGLGEDFSKNLGLNYQFIINLGLVLVSVMTAIIVT
VVGSLPFLGLIVPNSISAIKGDNMKNNLILTSFLGAVIVLICDIFGRLIIFPYEVSIGLTMGIIGSIFFLYFLMKGRRRS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=62492 FNL60_RS05735 WP_002262859.1 1111678..1112640(-) (ceuB) [Streptococcus mutans strain NBRC 13955]
ATGAAAAAAGTACTCACTGTTCCAGTGCTGGGTGCAGCTGCAGTCTTTCTTTCTCTCGTTTCAATATTTATCGGTGTTAA
GAGTCTATCGCTTTTTGAACTGGGCTCTTTAGACGATTCACAACTTAACATTTTATTATCTAGTCGCATTCCTAGAACGG
TTAGTATTTTAATTGCTGGCTCTAGTTTAGCCGTTTGTGGTTTAATTATGCAGCAATTAACGCAAAATAAATTTGTCTCA
CCGACAACGGCTGGGACAATGGATTGGGCAAAGCTAGGTGTTGTTGTCACTATTATCTTATTTAGTAAATCTTCTTTACT
ATTGCAGTTGATTATTTCATCGGTCTTTGTCATTTTTGGTTCTTTGTTTTTTATCTATCTTTTAAAGGTTATTAAATTTA
AGGATGATGTTTTCATTCCTCTAGTAGGTCTGATGTTGGGGAAAGTTGTATCTGCAATCAGTACTTTTTTAGGAGTACAG
TTTCAGATATTGCAGTCTGTAAACAGTTGGTTAGAAGGTCATTTTTCCATCATGACTTCTCATCGATATGAGATTTTATT
TTTGGTGCTGCCTTGCATGGTATTAATTTACCTTTATGCTCATCAGTTTACTATAGCTGGCTTGGGAGAAGATTTTTCTA
AAAATCTAGGTTTGAATTATCAATTTATTATTAATTTAGGCTTGGTTCTTGTTTCGGTTATGACAGCTATCATTGTAACA
GTTGTTGGCAGTCTTCCTTTTTTAGGTTTGATTGTTCCTAATTCGATTTCTGCTATCAAGGGCGATAATATGAAGAACAA
CTTAATATTAACCTCTTTTTTAGGTGCTGTTATTGTGCTTATTTGTGATATTTTTGGACGTCTTATTATTTTTCCATATG
AAGTTTCTATTGGATTGACTATGGGAATAATAGGAAGTATCTTTTTCCTTTATTTTTTAATGAAGGGAAGAAGGCGTTCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.768

99.688

0.456

Multiple sequence alignment