Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BLAC_RS00880 Genome accession   NC_022523
Coordinates   202477..204324 (+) Length   615 a.a.
NCBI ID   WP_022542497.1    Uniprot ID   -
Organism   Bifidobacterium animalis subsp. lactis ATCC 27673     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 197477..209324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLAC_RS00865 (BLAC_00870) - 198379..200697 (-) 2319 Protein_166 ABC transporter permease -
  BLAC_RS08225 (BLAC_00875) - 200694..201508 (-) 815 Protein_167 ABC transporter ATP-binding protein -
  BLAC_RS00875 (BLAC_00880) - 201812..202405 (+) 594 WP_004218469.1 MarR family winged helix-turn-helix transcriptional regulator -
  BLAC_RS00880 (BLAC_00885) rcrP 202477..204324 (+) 1848 WP_022542497.1 ABC transporter ATP-binding protein Regulator
  BLAC_RS00885 (BLAC_00890) rcrQ 204467..206302 (+) 1836 WP_022542498.1 ABC transporter ATP-binding protein Regulator
  BLAC_RS00890 (BLAC_00895) - 206316..207842 (-) 1527 WP_004218472.1 polysaccharide deacetylase family protein -
  BLAC_RS00895 (BLAC_00900) - 208208..208897 (-) 690 WP_004218473.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 68140.75 Da        Isoelectric Point: 5.7048

>NTDB_id=62471 BLAC_RS00880 WP_022542497.1 202477..204324(+) (rcrP) [Bifidobacterium animalis subsp. lactis ATCC 27673]
MIRIMKYLSKTEIGQLVLSLVTIVGQVYFDLELPSYMSQITRLVETPGSQMRDIWIAGGKMLLVSLGSLACAVITGYFAA
RVAASFGQRLRSLEFRKVESFGPSEMHRFSTASLITRSTNDITQIQMFITMGLQMLIKAPIMAVWAVCKIAGEGFEWTLA
TGIAVAILIISIAVLMVLVMPKFKAMQQLTDDINLVTRENLTGMRVVRAYNAQDYQEGKFERANSNLTNTQLFTNRAMSV
MMPLMGTIMNGLSLAIYWIGAYLIQDAGLTDKLTLFSNMVVFSSYAMQVVMSFLLMSMVFVLWPRADVSAHRVLEVLDTD
PLVKSGTAERGLTVQEAKQRGIITPAERARYADDLELAGEIEFRDVSFTYPDSREAMLEHISFTANRGDTVAIIGSTGSG
KSSLINLVPRFYDATDGEVLVDGVNVREYDLKTLRDKIGYVPQRSFLFKGTVESNVSYGDRPDEPEDVPVIDVSRMSGRK
AEREFLKAGEARELTAQEANRVREASDIAQATEFVSKMPKGFQSPIAQGGTNVSGGQKQRLSIARAVYRDPEILIFDDSF
SALDFKTDREVRDALKETAKDATKLIVAQRVGTIMDADCILVLEDGKVVGQGTRR

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=62471 BLAC_RS00880 WP_022542497.1 202477..204324(+) (rcrP) [Bifidobacterium animalis subsp. lactis ATCC 27673]
ATGATACGAATCATGAAATATCTCTCCAAAACGGAGATAGGGCAGCTGGTGTTGTCGCTGGTCACCATTGTGGGCCAGGT
GTACTTCGACCTCGAACTGCCAAGCTATATGTCACAGATCACGCGGCTCGTGGAGACGCCGGGCAGCCAGATGCGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGCTCGCATGCGCGGTGATCACCGGCTACTTCGCCGCG
CGCGTGGCGGCATCGTTCGGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTGGAGTCGTTCGGACCGTCCGAAATGCA
CCGCTTCTCCACGGCGAGCCTGATCACACGTTCGACGAACGACATCACGCAGATTCAGATGTTCATCACGATGGGCTTGC
AGATGCTCATCAAGGCGCCGATCATGGCCGTCTGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCTGTGGCGATCCTCATCATCTCGATCGCCGTGCTCATGGTGCTCGTCATGCCGAAGTTCAAGGCAATGCA
GCAGCTCACCGACGACATCAATCTGGTGACGCGCGAGAATCTGACCGGCATGCGCGTCGTGCGCGCCTACAATGCCCAGG
ACTACCAGGAAGGCAAGTTCGAGCGGGCGAACAGCAATCTGACGAACACACAGCTGTTCACGAACCGCGCGATGTCGGTG
ATGATGCCGCTCATGGGCACGATCATGAACGGGCTGTCGCTCGCAATCTACTGGATCGGCGCCTACCTGATCCAAGACGC
CGGCCTGACCGACAAACTCACGTTGTTCTCGAACATGGTCGTGTTCTCCAGCTACGCCATGCAGGTGGTGATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTGTGGCCGCGCGCCGACGTCTCCGCACACCGCGTGCTCGAAGTGCTCGACACCGAC
CCGCTCGTCAAGTCCGGCACCGCGGAGCGCGGGCTCACGGTGCAGGAGGCCAAGCAGCGCGGAATCATCACGCCAGCGGA
ACGTGCGCGATATGCCGACGACCTCGAGCTCGCCGGCGAGATCGAATTCCGCGACGTGAGCTTCACCTACCCCGATTCGC
GCGAGGCGATGCTCGAACACATCAGTTTCACGGCGAACAGGGGAGACACGGTGGCGATCATCGGCTCCACCGGTTCGGGC
AAGTCGTCGCTCATCAATCTCGTGCCGCGCTTCTACGATGCGACGGACGGCGAGGTGCTCGTGGACGGCGTGAATGTGCG
CGAATACGACTTGAAGACACTGCGCGACAAGATCGGCTACGTGCCGCAGCGCTCCTTCCTGTTCAAAGGCACCGTCGAAT
CGAATGTGAGCTACGGTGACCGGCCCGACGAACCCGAGGACGTGCCAGTGATCGACGTCTCGCGCATGAGCGGCCGCAAG
GCGGAACGGGAGTTCCTCAAGGCCGGCGAGGCGCGCGAGCTCACCGCGCAGGAGGCGAACCGCGTGCGCGAGGCGAGCGA
CATCGCACAGGCCACCGAATTCGTAAGCAAGATGCCGAAAGGCTTCCAGTCGCCGATCGCCCAGGGTGGCACGAATGTGT
CGGGCGGCCAGAAACAGCGCCTGTCGATTGCGCGCGCCGTGTACCGCGACCCGGAGATTCTGATCTTCGACGATTCGTTC
TCGGCACTCGACTTCAAAACCGACCGCGAGGTGCGCGACGCGTTGAAGGAGACGGCGAAGGACGCGACGAAGCTCATTGT
GGCGCAGCGCGTCGGCACGATCATGGACGCGGACTGCATTCTCGTGCTCGAGGACGGCAAGGTGGTGGGTCAAGGCACCA
GGCGATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(378-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.847

100

0.488

Multiple sequence alignment