Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   YB51_RS07765 Genome accession   NC_022516
Coordinates   1567398..1568087 (-) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis YB51     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1562398..1573087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS07740 (YB51_7740) - 1562868..1563581 (-) 714 WP_009910601.1 NADPH-dependent oxidoreductase -
  YB51_RS07745 (YB51_7745) dnaI 1563578..1564477 (-) 900 WP_002938337.1 primosomal protein DnaI -
  YB51_RS07750 (YB51_7750) - 1564477..1565628 (-) 1152 WP_002938340.1 hypothetical protein -
  YB51_RS07755 (YB51_7755) nrdR 1565615..1566106 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  YB51_RS07760 (YB51_7760) - 1566178..1567308 (-) 1131 WP_013730514.1 AI-2E family transporter -
  YB51_RS07765 (YB51_7765) covR 1567398..1568087 (-) 690 WP_002942700.1 DNA-binding response regulator Regulator
  YB51_RS07770 (YB51_7770) gndA 1568169..1569596 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  YB51_RS07775 (YB51_7775) - 1569693..1570232 (-) 540 WP_013730515.1 YceD family protein -
  YB51_RS07780 (YB51_7780) trxB 1570242..1571159 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  YB51_RS07785 (YB51_7785) - 1571173..1571397 (-) 225 WP_002936682.1 DUF4059 family protein -
  YB51_RS07790 (YB51_7790) - 1571415..1572758 (-) 1344 WP_002936685.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=62460 YB51_RS07765 WP_002942700.1 1567398..1568087(-) (covR) [Streptococcus suis YB51]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=62460 YB51_RS07765 WP_002942700.1 1567398..1568087(-) (covR) [Streptococcus suis YB51]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment