NTDB

Overview

Name	clpC	Type	Regulator
Locus tag	LMD38_RS20560	Genome accession	NZ_CP086328
Coordinates	3954577..3957177 (-)	Length	866 a.a.
NCBI ID	WP_016716861.1	Uniprot ID	-
Organism	Bacillus pacificus strain anQ-h4
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3949577..3962177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMD38_RS20530 (LMD38_20530)	fabH	3950701..3951633 (-)	933	WP_001100536.1	beta-ketoacyl-ACP synthase III	-
LMD38_RS20535 (LMD38_20535)	comZ	3951865..3952041 (-)	177	WP_001986215.1	ComZ family protein	Regulator
LMD38_RS20540 (LMD38_20540)	-	3952095..3952967 (-)	873	WP_062822688.1	NAD(P)-dependent oxidoreductase	-
LMD38_RS20545 (LMD38_20545)	-	3952997..3953731 (-)	735	WP_000028715.1	hydrolase	-
LMD38_RS20550 (LMD38_20550)	-	3953889..3954071 (+)	183	WP_001211115.1	YjzD family protein	-
LMD38_RS20555 (LMD38_20555)	-	3954218..3954526 (+)	309	WP_061183088.1	hypothetical protein	-
LMD38_RS20560 (LMD38_20560)	clpC	3954577..3957177 (-)	2601	WP_016716861.1	ATP-dependent chaperone ClpB	Regulator
LMD38_RS20565 (LMD38_20565)	-	3957389..3957568 (-)	180	WP_000531421.1	YjzC family protein	-
LMD38_RS20570 (LMD38_20570)	-	3958063..3958872 (+)	810	WP_001041235.1	Cof-type HAD-IIB family hydrolase	-
LMD38_RS20575 (LMD38_20575)	-	3958978..3959118 (+)	141	WP_000516816.1	hypothetical protein	-
LMD38_RS20580 (LMD38_20580)	-	3959119..3959316 (+)	198	WP_000527392.1	DUF3813 domain-containing protein	-
LMD38_RS20585 (LMD38_20585)	-	3959342..3960199 (-)	858	WP_000364456.1	YitT family protein	-
LMD38_RS20590 (LMD38_20590)	-	3960300..3960431 (+)	132	WP_001120845.1	DUF3941 domain-containing protein	-
LMD38_RS20595 (LMD38_20595)	prsA	3960562..3961419 (+)	858	WP_001214227.1	peptidylprolyl isomerase PrsA	-

Sequence

Protein

Download Length: 866 a.a. Molecular weight: 97464.49 Da Isoelectric Point: 5.1561

                                >NTDB_id=624319 LMD38_RS20560 WP_016716861.1 3954577..3957177(-) (clpC) [Bacillus pacificus strain anQ-h4]

MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAEGLIKKKPSVTGSGAE

AGKLYITGALQQLLVRAGKEAEKLQDDYISVEHVLLAFTEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT

YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI

FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD

EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA

CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE

HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG

EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM

SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI

IMTSNIGSAHLLDGLEDDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT

VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTIIDNSHVVVDVENNELVVHVK

Nucleotide

Download Length: 2601 bp

                                >NTDB_id=624319 LMD38_RS20560 WP_016716861.1 3954577..3957177(-) (clpC) [Bacillus pacificus strain anQ-h4]

ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCTCAATCTTTAGCGGTATCTCATCATCATCA

AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGCTAGCAGTACGTATTTTTCAAAAAATGA

ATGTCGATATAGAAGCGTTAAAACAAGGTGCTGAAGGTTTAATTAAGAAAAAGCCCTCTGTAACGGGAAGCGGTGCAGAA

GCAGGTAAATTATATATAACAGGTGCTTTGCAACAACTGCTTGTAAGAGCAGGAAAAGAAGCAGAAAAATTGCAAGATGA

TTACATTTCAGTTGAACATGTATTACTTGCTTTTACTGAAGAAAAAGGCGATATAAACCAATTATTTACAAGATTTCATA

TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT

TATGAAGCGTTAGAAAAATATGGTCGTGATTTAGTGGCGGAAGTAAGAGCGGGGAAAATTGACCCTGTTATCGGCCGCGA

TAGTGAAATTCGCCGCGTAATCCGCATTCTTTCACGTAAAACGAAAAACAACCCAGTTTTAATTGGTGAACCAGGTGTTG

GTAAAACAGCAATTGTTGAAGGGTTAGCACAGCGTATTGTGAAAAAGGATGTACCTGAAGGATTAAAAGATAGAACAATC

TTTGCATTAGATATGAGTGCGCTTGTAGCTGGAGCGAAATTCCGCGGTGAATTTGAAGAGCGTCTCCAAGCTGTATTAAA

TGAAATTAAAAAGAGTGAAGGTCGTATTTTACTATTCATTGATGAACTTCACACAATCGTCGGCGCTGGTAAAACAGAAG

GCGCAATGGATGCAGGGAATATGTTAAAACCGATGCTTGCGCGTGGTGAATTGCATTGTATCGGGGCGACGACGTTAGAT

GAATATCGTAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA

AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG

TAGCAGCATCAGTTTTATCAGATCGATATATTTCGGACCGTTTCTTACCAGATAAAGCAATTGACCTTGTCGATGAAGCG

TGTGCAACAATTCGTACAGAAATCGATTCTATGCCGACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTAGAAAT

TGAAGAAGCGGCTCTTGGAAAAGAAAAGGACTTTGGTAGCCAAGAACGTCTAAAAACGTTGCAACGTGAATTATCGGATT

TAAAAGAAGTTGCAAGTGGTATGAGAGCCAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA

CATTTAGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGGAATTACGATCTAAATAAAGCAGCGGAACTTCGCCACGG

AAAAATTCCTGCAATTGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC

GTGAGGAAGTAAGTGAAGAAGAAATTGCTGATATTGTTTCACGTTGGACTGGCATTCCTGTTGCAAAACTCGTTGAAGGT

GAACGCGAGAAATTACTACGTTTAGAGCAAATTTTATCAGAGCGTGTCATTGGACAAGAGGAAGCGGTAAGCTTAGTATC

AGACGCAGTTCTTCGTGCGCGCGCAGGTATTAAAGACCCGAACCGTCCGATTGGTTCCTTCATTTTCTTAGGACCTACTG

GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCATTATTCGATAGTGAAGAACAAATGATTCGTATTGATATG

TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGATATGAAGAGGGCGGTCA

ATTAACAGAAGCGGTAAGACGTAAACCGTATTCGGTTATTTTATTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA

ACATTTTATTACAAATGTTAGATGACGGTCGCATTACAGATTCGCAAGGACGTACAGTAGACTTTAAAAACACAGTTATT

ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGAAGATGATGGCTCCATTAAAGAGGAATCAAGAGA

GCTTGTTATGGGACAATTAAGAGGACATTTCCGACCAGAGTTTTTAAACCGTGTCGACGAAATTATTTTATTCAAACCTC

TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGTCGTTTAGCTGACCGTCACATTACG

GTAGAATTAACAGACGCAGCGAAAGAGTTTGTTGTCGAAGCTGGCTTCGATCCGATGTACGGAGCCCGTCCATTAAAAAG

ATATGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGTACGATTATTGACAATAGTCATGTAGTGG

TTGATGTAGAAAATAACGAGTTAGTTGTTCATGTGAAATGA