Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LLY41_RS16930 Genome accession   NZ_CP086235
Coordinates   3364749..3365705 (-) Length   318 a.a.
NCBI ID   WP_095243911.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3359749..3370705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS16905 (LLY41_16865) - 3360756..3361421 (-) 666 WP_304585922.1 DUF2268 domain-containing putative Zn-dependent protease -
  LLY41_RS16910 (LLY41_16870) fabF 3361663..3362900 (-) 1238 Protein_3318 beta-ketoacyl-ACP synthase II -
  LLY41_RS16915 (LLY41_16875) - 3362947..3363879 (-) 933 WP_095243914.1 beta-ketoacyl-ACP synthase III -
  LLY41_RS16920 (LLY41_16880) - 3364094..3364357 (+) 264 WP_304585923.1 hypothetical protein -
  LLY41_RS16925 (LLY41_16885) comZ 3364531..3364719 (-) 189 WP_251170538.1 ComZ family protein Regulator
  LLY41_RS16930 (LLY41_16890) med 3364749..3365705 (-) 957 WP_095243911.1 BMP family ABC transporter substrate-binding protein Regulator
  LLY41_RS16935 (LLY41_16895) - 3365815..3366642 (-) 828 WP_304585924.1 hypothetical protein -
  LLY41_RS16940 (LLY41_16900) - 3366722..3367459 (-) 738 WP_095243909.1 hydrolase -
  LLY41_RS16945 (LLY41_16905) - 3367644..3367835 (+) 192 WP_048010975.1 DUF2929 family protein -
  LLY41_RS16950 (LLY41_16910) clpB 3367905..3370502 (-) 2598 WP_304585925.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35571.22 Da        Isoelectric Point: 4.4921

>NTDB_id=623915 LLY41_RS16930 WP_095243911.1 3364749..3365705(-) (med) [Cytobacillus firmus strain T8]
MHKTLKNLGILLLCLLLLASCRQPMSAGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYDIEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAQNENTTSLNFEAYAMGFFGGMVAGHMTKTNNVGILAAF
EWQPEVEGFYEGANYINDKVNVQIQYVGNWDNDNKAIALLDKLIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTIQHVDVLYELVAEKYNEGELESGNLSFDFEDEVISLGKFSPDVDEKFKKELNAVIENYKKTGKLPE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=623915 LLY41_RS16930 WP_095243911.1 3364749..3365705(-) (med) [Cytobacillus firmus strain T8]
ATGCATAAGACATTAAAGAATTTAGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCAGACAGCCAATGTCTGC
AGGAAAACTTGAGAAAGCTGGATTATTAGTGCCCGATACTGTCAATGACCAAGTATGGGGGACCAAAGGCTATAAAGGCA
TGCTAAAGATTCAATCCCATTATGATATTGAGGTTTATTATAAAGAAGGCATGAATTCAGAGATGGTTGTTGAAAGAGCT
GTTAAAGAGTTTGACCAAAAAGGTGTGAACCTGATCTTTGGACATGGTAATGAATACGCTGCATACTTTAATAACATCTC
AAAAAAATATCCTGACATTCACTTTGTCAGCTTTAATGGTGACGCTCAAAATGAAAACACCACCAGTTTAAACTTTGAAG
CATATGCAATGGGTTTCTTCGGAGGCATGGTTGCAGGACATATGACGAAAACGAATAATGTAGGAATACTGGCGGCTTTT
GAATGGCAGCCGGAAGTAGAAGGTTTTTATGAAGGTGCAAACTATATCAATGATAAAGTAAACGTGCAGATCCAATATGT
TGGCAACTGGGACAATGATAACAAAGCCATCGCTCTTTTGGACAAACTTATTGCCAATAAGACAGATGTTGTATATCCGG
CCGGAGATGGGTATAATGTTCCTGTTATCGAAAAGCTGAAAGAAGAAGGGCTCTACGCCATCGGCTATATTTCCGATCAG
TCGGATTTAGGTGAATCAGTTGTCCTGACCAGTACAATTCAGCATGTAGATGTTTTATATGAACTAGTGGCAGAAAAATA
TAACGAAGGCGAGCTTGAATCAGGAAATCTATCCTTCGATTTCGAGGATGAAGTGATTTCACTTGGAAAATTCAGCCCAG
ACGTCGACGAAAAATTCAAAAAAGAACTAAACGCTGTCATTGAGAATTACAAAAAAACAGGCAAATTGCCTGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.229

98.742

0.516