Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LLY41_RS16925 Genome accession   NZ_CP086235
Coordinates   3364531..3364719 (-) Length   62 a.a.
NCBI ID   WP_251170538.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3359531..3369719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS16900 (LLY41_16860) - 3359582..3360607 (-) 1026 WP_095243917.1 ABC transporter ATP-binding protein -
  LLY41_RS16905 (LLY41_16865) - 3360756..3361421 (-) 666 WP_304585922.1 DUF2268 domain-containing putative Zn-dependent protease -
  LLY41_RS16910 (LLY41_16870) fabF 3361663..3362900 (-) 1238 Protein_3318 beta-ketoacyl-ACP synthase II -
  LLY41_RS16915 (LLY41_16875) - 3362947..3363879 (-) 933 WP_095243914.1 beta-ketoacyl-ACP synthase III -
  LLY41_RS16920 (LLY41_16880) - 3364094..3364357 (+) 264 WP_304585923.1 hypothetical protein -
  LLY41_RS16925 (LLY41_16885) comZ 3364531..3364719 (-) 189 WP_251170538.1 ComZ family protein Regulator
  LLY41_RS16930 (LLY41_16890) med 3364749..3365705 (-) 957 WP_095243911.1 BMP family ABC transporter substrate-binding protein Regulator
  LLY41_RS16935 (LLY41_16895) - 3365815..3366642 (-) 828 WP_304585924.1 hypothetical protein -
  LLY41_RS16940 (LLY41_16900) - 3366722..3367459 (-) 738 WP_095243909.1 hydrolase -
  LLY41_RS16945 (LLY41_16905) - 3367644..3367835 (+) 192 WP_048010975.1 DUF2929 family protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7225.41 Da        Isoelectric Point: 4.1773

>NTDB_id=623914 LLY41_RS16925 WP_251170538.1 3364531..3364719(-) (comZ) [Cytobacillus firmus strain T8]
MNEKNMEFMQIAMKYLPEAKQQLDEAGIELSMEMIQPFMNLFTKVMNEAYEMGKADALNKSE

Nucleotide


Download         Length: 189 bp        

>NTDB_id=623914 LLY41_RS16925 WP_251170538.1 3364531..3364719(-) (comZ) [Cytobacillus firmus strain T8]
ATGAACGAAAAGAATATGGAATTCATGCAAATCGCCATGAAATACCTGCCGGAAGCCAAACAGCAGCTCGACGAAGCAGG
CATCGAACTATCCATGGAAATGATTCAGCCATTCATGAACCTATTCACTAAAGTCATGAACGAAGCCTATGAAATGGGCA
AAGCGGATGCCTTGAATAAGAGTGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(3-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

98.387

0.71