Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LLY41_RS05810 Genome accession   NZ_CP086235
Coordinates   1168207..1168950 (+) Length   247 a.a.
NCBI ID   WP_304587146.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1163207..1173950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS05790 (LLY41_05800) - 1163750..1165410 (+) 1661 Protein_1101 GspE/PulE family protein -
  LLY41_RS05795 (LLY41_05805) pilT 1165420..1166475 (+) 1056 WP_304587143.1 type IV pilus twitching motility protein PilT Machinery gene
  LLY41_RS05800 (LLY41_05810) - 1166462..1167667 (+) 1206 WP_304587144.1 type II secretion system F family protein -
  LLY41_RS05805 (LLY41_05815) - 1167773..1168192 (+) 420 WP_304587145.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LLY41_RS05810 (LLY41_05820) comC 1168207..1168950 (+) 744 WP_304587146.1 A24 family peptidase Machinery gene
  LLY41_RS05815 (LLY41_05825) pilM 1169039..1170034 (+) 996 WP_304587147.1 type IV pilus biogenesis protein PilM -
  LLY41_RS05820 (LLY41_05830) - 1170038..1170697 (+) 660 WP_304587148.1 fimbrial assembly protein -
  LLY41_RS05825 (LLY41_05835) - 1170694..1171473 (+) 780 WP_304587149.1 pilus assembly protein PilO -
  LLY41_RS05830 (LLY41_05840) - 1171500..1171946 (+) 447 WP_304587150.1 type II secretion system protein -
  LLY41_RS05835 (LLY41_05845) - 1172074..1173156 (+) 1083 WP_304587151.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 26762.48 Da        Isoelectric Point: 9.3403

>NTDB_id=623893 LLY41_RS05810 WP_304587146.1 1168207..1168950(+) (comC) [Cytobacillus firmus strain T8]
MNLILLLIGLLLGSFYNVAGLRIPQNQSIAVPRSHCPHCKHTLTPLELVPVLSYIFLGGKCRRCKAPVSALYPAVELSTG
ILFAAAPLVMGWTAELFVAWTVISLVIIVFVSDFKYMIIPDKVLLFFAAVLIAERIFIPLSPWWDSLAGAGLGFFLLMLI
AIISKGGMGGGDIKLYAVIGIALGVKLVLLSFFLATLFGAAIGGLGMILGIVQKGKPIPFGPFIGIGTLLAYFYGREIIE
WYFHSFL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=623893 LLY41_RS05810 WP_304587146.1 1168207..1168950(+) (comC) [Cytobacillus firmus strain T8]
ATGAACTTAATATTGCTCTTAATCGGACTTCTTTTAGGCTCCTTCTACAACGTAGCAGGCCTAAGAATCCCGCAGAACCA
GTCTATCGCAGTACCGCGGTCCCATTGCCCGCACTGTAAGCATACTCTAACACCTTTGGAACTTGTTCCGGTCTTATCGT
ATATATTTCTAGGAGGAAAGTGCCGGCGCTGCAAAGCGCCGGTTTCAGCCTTATATCCGGCTGTTGAGCTTTCAACAGGA
ATCCTGTTTGCTGCTGCACCGCTGGTTATGGGATGGACTGCTGAATTGTTTGTTGCCTGGACGGTAATTTCGCTTGTAAT
CATTGTGTTTGTATCAGATTTCAAATATATGATTATTCCAGATAAGGTTTTGCTGTTTTTTGCTGCTGTCTTAATAGCAG
AACGCATTTTCATACCGCTCTCTCCGTGGTGGGACAGCTTAGCAGGTGCAGGACTTGGTTTCTTCCTTCTTATGCTGATA
GCTATCATCAGCAAAGGCGGCATGGGCGGAGGAGATATCAAGCTGTATGCCGTCATTGGCATTGCTTTAGGTGTAAAGCT
TGTTTTGCTTTCATTCTTCCTTGCTACATTATTCGGTGCCGCCATTGGCGGCCTTGGCATGATTCTGGGAATTGTTCAAA
AAGGCAAGCCTATCCCCTTTGGCCCATTCATTGGGATTGGGACTTTACTGGCTTATTTTTATGGCAGAGAAATAATTGAG
TGGTACTTTCATTCATTCTTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(102-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.628

96.761

0.49