Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LL975_RS06005 Genome accession   NZ_CP086198
Coordinates   1123588..1123878 (+) Length   96 a.a.
NCBI ID   WP_269887055.1    Uniprot ID   -
Organism   Macrococcoides canis strain KW0150     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1118588..1128878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL975_RS05970 (LL975_05950) - 1119038..1119403 (+) 366 WP_269887047.1 hypothetical protein -
  LL975_RS05975 (LL975_05955) - 1119463..1120623 (+) 1161 WP_269887048.1 SNF2-related protein -
  LL975_RS05980 (LL975_05960) - 1120623..1121906 (+) 1284 WP_269887049.1 DUF3440 domain-containing protein -
  LL975_RS05985 (LL975_05965) - 1121881..1122402 (+) 522 WP_269887096.1 IbrB-like domain-containing protein -
  LL975_RS05990 (LL975_05970) - 1122402..1122626 (+) 225 WP_269887050.1 hypothetical protein -
  LL975_RS05995 (LL975_05975) - 1122681..1123112 (-) 432 WP_269887051.1 YolD-like family protein -
  LL975_RS06000 (LL975_05980) - 1123087..1123344 (-) 258 WP_269887053.1 hypothetical protein -
  LL975_RS06005 (LL975_05985) comGC 1123588..1123878 (+) 291 WP_269887055.1 competence type IV pilus major pilin ComGC Machinery gene
  LL975_RS06010 (LL975_05990) comGD 1123871..1124296 (+) 426 WP_269887098.1 competence type IV pilus minor pilin ComGD -
  LL975_RS06015 (LL975_05995) - 1124283..1124525 (+) 243 WP_236365610.1 hypothetical protein -
  LL975_RS06020 (LL975_06000) - 1124470..1124922 (+) 453 WP_254254545.1 competence type IV pilus minor pilin ComGF -
  LL975_RS06025 (LL975_06005) - 1125083..1125589 (+) 507 WP_086042649.1 shikimate kinase -
  LL975_RS06030 (LL975_06010) gcvT 1125727..1126812 (+) 1086 WP_086043664.1 glycine cleavage system aminomethyltransferase GcvT -
  LL975_RS06035 (LL975_06015) gcvPA 1126825..1128168 (+) 1344 WP_254254544.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10406.34 Da        Isoelectric Point: 4.9630

>NTDB_id=623601 LL975_RS06005 WP_269887055.1 1123588..1123878(+) (comGC) [Macrococcoides canis strain KW0150]
MKLITLIEMLLVLLVISILIILIIPNIAKQSKTVQAKGCEAQVRMVQGQIEAYRLETGNTPSTVNELVPGYLQENQVKCK
DGTDIIINDGVASIGA

Nucleotide


Download         Length: 291 bp        

>NTDB_id=623601 LL975_RS06005 WP_269887055.1 1123588..1123878(+) (comGC) [Macrococcoides canis strain KW0150]
ATGAAATTGATAACGTTAATTGAAATGTTATTAGTATTACTCGTTATTTCAATATTAATCATCTTGATCATTCCGAATAT
CGCTAAACAGTCTAAGACTGTACAGGCTAAAGGGTGTGAAGCTCAAGTAAGGATGGTACAAGGTCAGATTGAAGCATACC
GACTTGAAACAGGGAATACACCTTCAACAGTTAATGAACTTGTTCCTGGTTATTTACAAGAAAATCAGGTGAAATGTAAG
GACGGAACGGACATCATAATTAATGATGGAGTGGCATCAATTGGTGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

55.556

93.75

0.521
  comGC Staphylococcus aureus N315

55.556

93.75

0.521
  comGC Bacillus subtilis subsp. subtilis str. 168

44.444

93.75

0.417