Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LL975_RS05565 | Genome accession | NZ_CP086198 |
| Coordinates | 1067463..1068434 (+) | Length | 323 a.a. |
| NCBI ID | WP_236365614.1 | Uniprot ID | - |
| Organism | Macrococcoides canis strain KW0150 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1031176..1070853 | 1067463..1068434 | within | 0 |
Gene organization within MGE regions
Location: 1031176..1070853
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL975_RS05360 (LL975_05345) | - | 1031179..1031523 (+) | 345 | WP_226997687.1 | diacylglycerol kinase family protein | - |
| LL975_RS05365 (LL975_05350) | cdd | 1031536..1031940 (+) | 405 | WP_086042767.1 | cytidine deaminase | - |
| LL975_RS05370 (LL975_05355) | era | 1031940..1032842 (+) | 903 | WP_086042766.1 | GTPase Era | - |
| LL975_RS05375 (LL975_05360) | recO | 1032842..1033591 (+) | 750 | WP_086042765.1 | DNA repair protein RecO | - |
| LL975_RS05380 (LL975_05365) | kynA | 1033660..1034502 (-) | 843 | WP_236365630.1 | tryptophan 2,3-dioxygenase | - |
| LL975_RS05385 (LL975_05370) | kynB | 1034486..1035118 (-) | 633 | WP_254254558.1 | arylformamidase | - |
| LL975_RS05390 (LL975_05375) | kynU | 1035118..1036386 (-) | 1269 | WP_254254557.1 | kynureninase | - |
| LL975_RS05395 (LL975_05380) | - | 1036655..1038043 (-) | 1389 | WP_254254556.1 | glycine--tRNA ligase | - |
| LL975_RS05400 (LL975_05385) | - | 1038319..1038960 (+) | 642 | WP_086043666.1 | helix-turn-helix transcriptional regulator | - |
| LL975_RS05405 (LL975_05390) | - | 1038972..1039787 (+) | 816 | WP_086042760.1 | pyruvate, water dikinase regulatory protein | - |
| LL975_RS05410 (LL975_05395) | dnaG | 1039792..1041552 (+) | 1761 | WP_269886956.1 | DNA primase | - |
| LL975_RS05415 (LL975_05400) | rpoD | 1041574..1042674 (+) | 1101 | WP_086042758.1 | RNA polymerase sigma factor RpoD | - |
| LL975_RS05420 (LL975_05405) | - | 1042764..1043114 (+) | 351 | WP_254254553.1 | c-type cytochrome | - |
| LL975_RS05425 (LL975_05410) | - | 1043188..1043877 (+) | 690 | WP_254254552.1 | tRNA (adenine(22)-N(1))-methyltransferase | - |
| LL975_RS05430 (LL975_05415) | - | 1043864..1044946 (+) | 1083 | WP_269886959.1 | Nif3-like dinuclear metal center hexameric protein | - |
| LL975_RS05435 (LL975_05420) | - | 1044982..1045950 (-) | 969 | WP_086042754.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| LL975_RS05440 (LL975_05425) | - | 1046081..1047409 (+) | 1329 | WP_086042753.1 | DEAD/DEAH box helicase | - |
| LL975_RS05445 (LL975_05430) | - | 1047420..1048316 (+) | 897 | WP_254255410.1 | deoxyribonuclease IV | - |
| LL975_RS05450 (LL975_05435) | - | 1048385..1049155 (+) | 771 | WP_269886961.1 | metal ABC transporter ATP-binding protein | - |
| LL975_RS05455 (LL975_05440) | - | 1049158..1050003 (+) | 846 | WP_133419344.1 | metal ABC transporter permease | - |
| LL975_RS05460 (LL975_05445) | - | 1049993..1050400 (+) | 408 | WP_086042750.1 | Fur family transcriptional regulator | - |
| LL975_RS05465 (LL975_05450) | - | 1050425..1051003 (-) | 579 | WP_269886962.1 | 5' nucleotidase, NT5C type | - |
| LL975_RS05470 (LL975_05455) | ispG | 1050990..1052096 (-) | 1107 | WP_254255409.1 | flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | - |
| LL975_RS05475 (LL975_05460) | - | 1052182..1052913 (-) | 732 | WP_254254550.1 | DUF1189 family protein | - |
| LL975_RS05480 (LL975_05465) | - | 1053046..1053645 (+) | 600 | WP_086042747.1 | superoxide dismutase | - |
| LL975_RS05485 (LL975_05470) | - | 1053799..1055808 (+) | 2010 | WP_254255408.1 | peptidoglycan D,D-transpeptidase FtsI family protein | - |
| LL975_RS05490 (LL975_05475) | - | 1055950..1056912 (+) | 963 | WP_236365619.1 | PstS family phosphate ABC transporter substrate-binding protein | - |
| LL975_RS05495 (LL975_05480) | pstC | 1056982..1057911 (+) | 930 | WP_086042744.1 | phosphate ABC transporter permease subunit PstC | - |
| LL975_RS05500 (LL975_05485) | pstA | 1057913..1058806 (+) | 894 | WP_086042743.1 | phosphate ABC transporter permease PstA | - |
| LL975_RS05505 (LL975_05490) | pstB | 1058831..1059721 (+) | 891 | WP_086042742.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LL975_RS05510 (LL975_05495) | phoU | 1059714..1060352 (+) | 639 | WP_226997618.1 | phosphate signaling complex protein PhoU | - |
| LL975_RS05515 (LL975_05500) | rpmG | 1060441..1060590 (+) | 150 | WP_041636027.1 | 50S ribosomal protein L33 | - |
| LL975_RS05520 (LL975_05505) | ltrA | 1061134..1062420 (+) | 1287 | WP_254254838.1 | group II intron reverse transcriptase/maturase | - |
| LL975_RS05525 (LL975_05510) | - | 1062549..1063103 (+) | 555 | WP_157891076.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LL975_RS05530 (LL975_05515) | - | 1063079..1064527 (+) | 1449 | WP_086042739.1 | rhomboid family protein | - |
| LL975_RS05535 (LL975_05520) | - | 1064532..1064723 (+) | 192 | WP_086042738.1 | YqgQ family protein | - |
| LL975_RS05540 (LL975_05525) | - | 1064720..1065688 (+) | 969 | WP_236365616.1 | ROK family glucokinase | - |
| LL975_RS05545 (LL975_05530) | - | 1065688..1065999 (+) | 312 | WP_086042736.1 | MTH1187 family thiamine-binding protein | - |
| LL975_RS05550 (LL975_05535) | - | 1066026..1066265 (-) | 240 | WP_174804788.1 | DUF2759 domain-containing protein | - |
| LL975_RS05555 (LL975_05540) | - | 1066355..1066975 (+) | 621 | WP_086042734.1 | MBL fold metallo-hydrolase | - |
| LL975_RS05560 (LL975_05545) | - | 1067003..1067251 (-) | 249 | WP_086042733.1 | DUF2626 domain-containing protein | - |
| LL975_RS05565 (LL975_05550) | comGA | 1067463..1068434 (+) | 972 | WP_236365614.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LL975_RS05570 (LL975_05555) | comGB | 1068409..1069458 (+) | 1050 | WP_254254547.1 | competence type IV pilus assembly protein ComGB | - |
| LL975_RS05575 (LL975_05560) | - | 1069471..1069551 (+) | 81 | WP_269887095.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LL975_RS05580 (LL975_05565) | - | 1069639..1070853 (-) | 1215 | WP_086042729.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37271.88 Da Isoelectric Point: 6.7240
>NTDB_id=623599 LL975_RS05565 WP_236365614.1 1067463..1068434(+) (comGA) [Macrococcoides canis strain KW0150]
MEKLFNEIIEEAIIQGASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
KDLRYNIRASTLPRALGDEACVLRIIRQNFIDEYQTDDKILFNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAQQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGKGRLLTYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
MEKLFNEIIEEAIIQGASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
KDLRYNIRASTLPRALGDEACVLRIIRQNFIDEYQTDDKILFNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAQQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGKGRLLTYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=623599 LL975_RS05565 WP_236365614.1 1067463..1068434(+) (comGA) [Macrococcoides canis strain KW0150]
ATGGAAAAATTATTCAATGAAATAATAGAGGAAGCAATTATACAAGGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACGGCACATCTTGACGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCATTTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGAGCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATTGATGAATATCAGACGGATGACAAGATATTGTTCAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTACCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAAGTTAATGTTAACGAAAAAGCAGAGATAAC
ATATCATACCGCGATAAAGGCAATCCTTAGATGTGATCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACAGCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAGAAAGATGGGAAGGGGCGTCTATTGACCTATGAATTTTTGACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
ATGGAAAAATTATTCAATGAAATAATAGAGGAAGCAATTATACAAGGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACGGCACATCTTGACGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCATTTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGAGCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATTGATGAATATCAGACGGATGACAAGATATTGTTCAATCAAATAAAAAAATCAAGCGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTACCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAAGTTAATGTTAACGAAAAAGCAGAGATAAC
ATATCATACCGCGATAAAGGCAATCCTTAGATGTGATCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTAG
CACAGCAAGTGATCAATGCAGGACTAAGCGGTCATCTCGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAGAAAGATGGGAAGGGGCGTCTATTGACCTATGAATTTTTGACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
48.78 |
100 |
0.495 |
| comGA | Staphylococcus aureus N315 |
48.78 |
100 |
0.495 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
38.037 |
100 |
0.384 |
| pilB | Glaesserella parasuis strain SC1401 |
34.012 |
100 |
0.362 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
34.513 |
100 |
0.362 |