Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LL930_RS13925 Genome accession   NZ_CP086188
Coordinates   2902569..2904020 (-) Length   483 a.a.
NCBI ID   WP_171970756.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain PXO79     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2890507..2908874 2902569..2904020 within 0


Gene organization within MGE regions


Location: 2890507..2908874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL930_RS13860 (LL930_13840) - 2890573..2891094 (+) 522 WP_274393934.1 DUF6714 family protein -
  LL930_RS13865 (LL930_13845) - 2891161..2892480 (-) 1320 WP_115862282.1 IS701-like element ISXo15 family transposase -
  LL930_RS13870 (LL930_13850) coaE 2892551..2893159 (-) 609 WP_011258357.1 dephospho-CoA kinase -
  LL930_RS13875 (LL930_13855) - 2893173..2894036 (-) 864 WP_011258358.1 A24 family peptidase -
  LL930_RS13880 (LL930_13860) pilC 2894043..2895302 (-) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  LL930_RS13885 (LL930_13865) pilA2 2895657..2896082 (+) 426 WP_011408068.1 pilin Machinery gene
  LL930_RS13890 (LL930_13870) - 2896217..2897806 (+) 1590 WP_011408069.1 phosphoethanolamine transferase -
  LL930_RS13895 (LL930_13875) - 2897817..2898446 (+) 630 WP_011408070.1 hypothetical protein -
  LL930_RS13900 (LL930_13880) - 2898416..2899942 (+) 1527 WP_011258362.1 membrane protein -
  LL930_RS13905 (LL930_13885) pilB 2899977..2901710 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LL930_RS13910 (LL930_13890) - 2901719..2901979 (-) 261 WP_011408073.1 Fic family protein -
  LL930_RS13915 (LL930_13895) - 2902067..2902228 (-) 162 WP_153296778.1 hypothetical protein -
  LL930_RS13920 (LL930_13900) - 2902290..2902496 (-) 207 WP_027703281.1 YhfG family protein -
  LL930_RS13925 (LL930_13905) pilR 2902569..2904020 (-) 1452 WP_171970756.1 sigma-54 dependent transcriptional regulator Regulator
  LL930_RS13930 (LL930_13910) - 2904291..2905904 (-) 1614 WP_044756976.1 PAS domain-containing sensor histidine kinase -
  LL930_RS13935 (LL930_13915) sucC 2906138..2907307 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  LL930_RS13940 (LL930_13920) sucD 2907332..2908207 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  LL930_RS13945 (LL930_13925) - 2908380..2908874 (+) 495 WP_044756974.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 6.8290

>NTDB_id=623457 LL930_RS13925 WP_171970756.1 2902569..2904020(-) (pilR) [Xanthomonas oryzae strain PXO79]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=623457 LL930_RS13925 WP_171970756.1 2902569..2904020(-) (pilR) [Xanthomonas oryzae strain PXO79]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462