Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LL142_RS03030 Genome accession   NZ_CP086168
Coordinates   586964..587737 (+) Length   257 a.a.
NCBI ID   WP_060816330.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10190     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 581964..592737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS03015 (LL142_03015) - 582813..584747 (-) 1935 WP_070309968.1 RNB domain-containing ribonuclease -
  LL142_RS03020 (LL142_03020) ilvC 584866..585888 (+) 1023 WP_032589477.1 ketol-acid reductoisomerase -
  LL142_RS03025 (LL142_03025) - 585892..586974 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  LL142_RS03030 (LL142_03030) dprA 586964..587737 (+) 774 WP_060816330.1 DNA-processing protein DprA Machinery gene
  LL142_RS03035 (LL142_03035) ruvX 587734..588117 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  LL142_RS03040 (LL142_03040) - 588146..588985 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LL142_RS03045 (LL142_03045) msrA 589161..589658 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LL142_RS03050 (LL142_03050) ppa 589699..590217 (-) 519 WP_002855031.1 inorganic diphosphatase -
  LL142_RS03055 (LL142_03055) adk 590227..590805 (-) 579 WP_002855137.1 adenylate kinase -
  LL142_RS03060 (LL142_03060) aspS 590802..592553 (-) 1752 WP_227930800.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28770.57 Da        Isoelectric Point: 7.6510

>NTDB_id=623182 LL142_RS03030 WP_060816330.1 586964..587737(+) (dprA) [Campylobacter jejuni strain CMP10190]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SIAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKTKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=623182 LL142_RS03030 WP_060816330.1 586964..587737(+) (dprA) [Campylobacter jejuni strain CMP10190]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAACCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTATAGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAACAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.438

99.611

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455