Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   LL142_RS02840 Genome accession   NZ_CP086168
Coordinates   545025..545675 (-) Length   216 a.a.
NCBI ID   WP_002921201.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10190     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 540025..550675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS02805 (LL142_02805) - 540402..541406 (+) 1005 WP_227930827.1 hypothetical protein -
  LL142_RS02810 (LL142_02810) tlyA 541403..542164 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  LL142_RS02815 (LL142_02815) ribF 542130..542984 (+) 855 WP_052857861.1 bifunctional riboflavin kinase/FAD synthetase -
  LL142_RS02820 (LL142_02820) cmoA 542971..543681 (+) 711 WP_079460649.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  LL142_RS02825 (LL142_02825) - 543698..543892 (-) 195 WP_079263876.1 EexN family lipoprotein -
  LL142_RS02830 (LL142_02830) - 543883..544323 (-) 441 WP_052801307.1 EexN family lipoprotein -
  LL142_RS02835 (LL142_02835) - 544382..545014 (-) 633 WP_052781975.1 trimeric intracellular cation channel family protein -
  LL142_RS02840 (LL142_02840) CJE1441 545025..545675 (-) 651 WP_002921201.1 DNA/RNA non-specific endonuclease Regulator
  LL142_RS02845 (LL142_02845) nth 545672..546298 (-) 627 WP_002857170.1 endonuclease III -
  LL142_RS02850 (LL142_02850) peb4 546379..547200 (+) 822 WP_052804437.1 peptidylprolyl isomerase PEB4 -
  LL142_RS02855 (LL142_02855) fbaA 547200..548264 (+) 1065 WP_002880322.1 class II fructose-bisphosphate aldolase -
  LL142_RS02860 (LL142_02860) - 548359..549801 (+) 1443 WP_002854979.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25474.25 Da        Isoelectric Point: 9.8188

>NTDB_id=623181 LL142_RS02840 WP_002921201.1 545025..545675(-) (CJE1441) [Campylobacter jejuni strain CMP10190]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=623181 LL142_RS02840 WP_002921201.1 545025..545675(-) (CJE1441) [Campylobacter jejuni strain CMP10190]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATAATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639