Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   LL136_RS07310 Genome accession   NZ_CP086167
Coordinates   1436345..1436932 (-) Length   195 a.a.
NCBI ID   WP_002899082.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10201     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431345..1441932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL136_RS07290 (LL136_07290) - 1432093..1432857 (+) 765 WP_071170296.1 TIGR02757 family protein -
  LL136_RS07295 (LL136_07295) - 1432861..1433625 (+) 765 WP_002855301.1 TSUP family transporter -
  LL136_RS07300 (LL136_07300) ctsF 1433618..1434799 (-) 1182 WP_032590155.1 type II secretion system F family protein Machinery gene
  LL136_RS07305 (LL136_07305) ctsE 1434796..1436355 (-) 1560 WP_052834459.1 GspE/PulE family protein Machinery gene
  LL136_RS07310 (LL136_07310) ctsX 1436345..1436932 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  LL136_RS07315 (LL136_07315) ctsP 1436936..1437544 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  LL136_RS07320 (LL136_07320) mshL 1437537..1438948 (-) 1412 Protein_1425 pilus (MSHA type) biogenesis protein MshL -
  LL136_RS07325 (LL136_07325) ctsR 1438926..1439237 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23373.46 Da        Isoelectric Point: 9.9099

>NTDB_id=623172 LL136_RS07310 WP_002899082.1 1436345..1436932(-) (ctsX) [Campylobacter jejuni strain CMP10201]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYRNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=623172 LL136_RS07310 WP_002899082.1 1436345..1436932(-) (ctsX) [Campylobacter jejuni strain CMP10201]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACACATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCGAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99