Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   LL136_RS07300 Genome accession   NZ_CP086167
Coordinates   1433618..1434799 (-) Length   393 a.a.
NCBI ID   WP_032590155.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10201     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1428618..1439799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL136_RS07270 (LL136_07270) - 1429163..1429504 (+) 342 WP_032590145.1 hypothetical protein -
  LL136_RS07275 (LL136_07275) flgM 1429567..1429764 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  LL136_RS07280 (LL136_07280) - 1429806..1430240 (+) 435 WP_002779263.1 flagellar protein FlgN -
  LL136_RS07285 (LL136_07285) flgK 1430250..1432076 (+) 1827 WP_052785931.1 flagellar hook-associated protein FlgK -
  LL136_RS07290 (LL136_07290) - 1432093..1432857 (+) 765 WP_071170296.1 TIGR02757 family protein -
  LL136_RS07295 (LL136_07295) - 1432861..1433625 (+) 765 WP_002855301.1 TSUP family transporter -
  LL136_RS07300 (LL136_07300) ctsF 1433618..1434799 (-) 1182 WP_032590155.1 type II secretion system F family protein Machinery gene
  LL136_RS07305 (LL136_07305) ctsE 1434796..1436355 (-) 1560 WP_052834459.1 GspE/PulE family protein Machinery gene
  LL136_RS07310 (LL136_07310) ctsX 1436345..1436932 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  LL136_RS07315 (LL136_07315) ctsP 1436936..1437544 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  LL136_RS07320 (LL136_07320) mshL 1437537..1438948 (-) 1412 Protein_1425 pilus (MSHA type) biogenesis protein MshL -
  LL136_RS07325 (LL136_07325) ctsR 1438926..1439237 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45760.36 Da        Isoelectric Point: 9.0938

>NTDB_id=623170 LL136_RS07300 WP_032590155.1 1433618..1434799(-) (ctsF) [Campylobacter jejuni strain CMP10201]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=623170 LL136_RS07300 WP_032590155.1 1433618..1434799(-) (ctsF) [Campylobacter jejuni strain CMP10201]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTTAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987