Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   LL138_RS02855 Genome accession   NZ_CP086160
Coordinates   539642..540292 (-) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain SHI5328     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 534642..545292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS02820 (LL138_02820) - 535020..536024 (+) 1005 WP_011049741.1 membrane protein -
  LL138_RS02825 (LL138_02825) tlyA 536021..536782 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  LL138_RS02830 (LL138_02830) ribF 536748..537602 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  LL138_RS02835 (LL138_02835) cmoA 537589..538299 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  LL138_RS02840 (LL138_02840) - 538289..538510 (-) 222 WP_002859102.1 EexN family lipoprotein -
  LL138_RS02845 (LL138_02845) - 538507..538941 (-) 435 WP_002870071.1 EexN family lipoprotein -
  LL138_RS02850 (LL138_02850) - 538999..539631 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  LL138_RS02855 (LL138_02855) CJE0566 539642..540292 (-) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  LL138_RS02860 (LL138_02860) nth 540289..540915 (-) 627 WP_002852225.1 endonuclease III -
  LL138_RS02865 (LL138_02865) peb4 540996..541817 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  LL138_RS02870 (LL138_02870) fbaA 541817..542881 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  LL138_RS02875 (LL138_02875) - 542976..544418 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=622964 LL138_RS02855 WP_002886738.1 539642..540292(-) (CJE0566) [Campylobacter jejuni strain SHI5328]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=622964 LL138_RS02855 WP_002886738.1 539642..540292(-) (CJE0566) [Campylobacter jejuni strain SHI5328]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63