Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KW2_RS08495 Genome accession   NC_022369
Coordinates   1797542..1799347 (-) Length   601 a.a.
NCBI ID   WP_021037659.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1792542..1804347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS08480 (kw2_1701) alaS 1792894..1795512 (-) 2619 WP_021037657.1 alanine--tRNA ligase -
  KW2_RS08485 (kw2_1702) - 1795774..1796700 (-) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  KW2_RS08490 (kw2_1703) - 1796856..1797539 (-) 684 WP_021037658.1 O-methyltransferase -
  KW2_RS08495 (kw2_1704) pepF 1797542..1799347 (-) 1806 WP_021037659.1 oligoendopeptidase F Regulator
  KW2_RS08500 (kw2_1705) coiA 1799423..1800406 (-) 984 WP_021037660.1 competence protein CoiA Machinery gene
  KW2_RS08505 (kw2_1706) - 1800481..1801566 (-) 1086 WP_014735114.1 YdcF family protein -
  KW2_RS08510 (kw2_1707) - 1801720..1802568 (-) 849 WP_021037661.1 alpha/beta hydrolase -
  KW2_RS08515 (kw2_1708) - 1802777..1804198 (-) 1422 WP_011676727.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69977.68 Da        Isoelectric Point: 4.9121

>NTDB_id=62275 KW2_RS08495 WP_021037659.1 1797542..1799347(-) (pepF) [Lactococcus cremoris subsp. cremoris KW2]
MVKNRNEIPEALTWDLTTIFSTDQKWETELENVKKELSLVETNNKGHLLDSAEALLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEQWLEILQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWARIPHFYYNFYVFQYATGFAAASFLAEKVVHGSVTDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=62275 KW2_RS08495 WP_021037659.1 1797542..1799347(-) (pepF) [Lactococcus cremoris subsp. cremoris KW2]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAACGTAAAAAAAGAGCTTTCACTTGTTGAGACAAATAATAAAGGTCATTTACTTGATTCAGCAGAAG
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAGTTTTTAAAAATTACAAAAGAAACCTACGAACAATGGTTAGAAATCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGTGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAACATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGACTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAAAAAATCTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTTATGTTACTCA
ATTGGCAAGGGACTTTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAACCTTATGTTTATGGCGATTACCCGATTTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGTAATGATGAAAAGGAACGTTTTGCTCTTTTAAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTGTTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAATCCTGAAATTCAGTTTGA
ATGGGCAAGAATTCCTCATTTCTATTATAATTTTTACGTTTTTCAATATGCAACTGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGTTACTGACCGTCAAAATTATCTTGATTATTTAAAAGCTGGTTCGTCAGCCTACCCA
CTAGACGTGATTGCAAAAGCTGGAGTCAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.06

100

0.641

Multiple sequence alignment