Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LL046_RS11780 Genome accession   NZ_CP086088
Coordinates   2287683..2288174 (-) Length   163 a.a.
NCBI ID   WP_017865170.1    Uniprot ID   S6FB26
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2282683..2293174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS11780 (LL046_11730) comX 2287683..2288174 (-) 492 WP_017865170.1 hypothetical protein Regulator
  LL046_RS11785 (LL046_11735) ezrA 2288433..2290163 (-) 1731 WP_017865171.1 septation ring formation regulator EzrA -
  LL046_RS11790 (LL046_11740) tsf 2290368..2291396 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  LL046_RS11795 (LL046_11745) rpsB 2291516..2292283 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19792.62 Da        Isoelectric Point: 5.3596

>NTDB_id=622457 LL046_RS11780 WP_017865170.1 2287683..2288174(-) (comX) [Lactococcus lactis subsp. lactis strain EIP13A]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=622457 LL046_RS11780 WP_017865170.1 2287683..2288174(-) (comX) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTTTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCTATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6FB26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.773

100

0.988
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767