Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LL045_RS11540 Genome accession   NZ_CP086083
Coordinates   2350483..2350977 (-) Length   164 a.a.
NCBI ID   WP_058206121.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345483..2355977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS11540 (LL045_11510) comX 2350483..2350977 (-) 495 WP_058206121.1 hypothetical protein Regulator
  LL045_RS11545 (LL045_11515) ezrA 2351236..2352966 (-) 1731 WP_021723359.1 septation ring formation regulator EzrA -
  LL045_RS11550 (LL045_11520) tsf 2353171..2354199 (-) 1029 WP_010906339.1 translation elongation factor Ts -
  LL045_RS11555 (LL045_11525) rpsB 2354321..2355088 (-) 768 WP_038602408.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19863.69 Da        Isoelectric Point: 5.3639

>NTDB_id=622408 LL045_RS11540 WP_058206121.1 2350483..2350977(-) (comX) [Lactococcus lactis subsp. lactis strain EIP20A]
MTYYLEEEGFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDDGQKLHTKFKVKYHQRLIDELRRSY
AKKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQELLLRQMRGEELTRMERYRLREKIKAILFS
EDEE

Nucleotide


Download         Length: 495 bp        

>NTDB_id=622408 LL045_RS11540 WP_058206121.1 2350483..2350977(-) (comX) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGTATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGATGGTCAAAAGCTACATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAGCTAAGACGGAGTTAT
GCAAAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAG
TCCAGATAATGAAGTGGTCTTCAATCATTTGCTAGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGAATTACTAC
TTCGACAAATGCGAGGAGAAGAATTAACTCGTATGGAACGATATCGCCTTCGTGAAAAAATAAAAGCCATCTTATTTTCA
GAAGATGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

96.951

100

0.97
  comX Lactococcus lactis subsp. cremoris KW2

76.829

100

0.768