Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LY180_RS05155 Genome accession   NC_022364
Coordinates   1082369..1082998 (+) Length   209 a.a.
NCBI ID   WP_000793791.1    Uniprot ID   -
Organism   Escherichia coli LY180     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077369..1087998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY180_RS05130 (LY180_05015) ycbZ 1077770..1079530 (-) 1761 WP_000156524.1 Lon protease family protein -
  LY180_RS05135 (LY180_05020) matP 1079716..1080168 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LY180_RS05140 (LY180_05025) ompA 1080244..1081284 (-) 1041 WP_000750416.1 porin OmpA -
  LY180_RS05150 (LY180_05030) sulA 1081641..1082150 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LY180_RS05155 (LY180_05035) sxy/tfoX 1082369..1082998 (+) 630 WP_000793791.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LY180_RS05160 (LY180_05040) yccS 1082961..1085123 (-) 2163 WP_000875023.1 YccS family putative transporter -
  LY180_RS05165 (LY180_05045) yccF 1085133..1085579 (-) 447 WP_001261235.1 YccF domain-containing protein -
  LY180_RS05170 (LY180_05050) helD 1085702..1087756 (+) 2055 WP_001349949.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.99 Da        Isoelectric Point: 8.8133

>NTDB_id=62239 LY180_RS05155 WP_000793791.1 1082369..1082998(+) (sxy/tfoX) [Escherichia coli LY180]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=62239 LY180_RS05155 WP_000793791.1 1082369..1082998(+) (sxy/tfoX) [Escherichia coli LY180]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment