Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LLJ08_RS03090 Genome accession   NZ_CP086067
Coordinates   682474..684066 (-) Length   530 a.a.
NCBI ID   WP_041015969.1    Uniprot ID   -
Organism   Stutzerimonas chloritidismutans strain 6L11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 677474..689066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJ08_RS03075 (LLJ08_03080) - 678065..679660 (-) 1596 WP_014819059.1 response regulator -
  LLJ08_RS03080 (LLJ08_03085) - 679876..680934 (+) 1059 WP_228208186.1 DUF2333 family protein -
  LLJ08_RS03085 (LLJ08_03090) pilR 681012..682349 (-) 1338 WP_228208187.1 sigma-54-dependent transcriptional regulator Regulator
  LLJ08_RS03090 (LLJ08_03095) pilS 682474..684066 (-) 1593 WP_041015969.1 sensor histidine kinase Regulator
  LLJ08_RS03095 (LLJ08_03100) - 684056..684289 (-) 234 WP_014819063.1 PP0621 family protein -
  LLJ08_RS03100 (LLJ08_03105) - 684406..685395 (-) 990 WP_014819064.1 outer membrane protein assembly factor BamD -
  LLJ08_RS03105 (LLJ08_03110) rluD 685601..686575 (+) 975 WP_014819065.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LLJ08_RS03110 (LLJ08_03115) pgeF 686572..687306 (+) 735 WP_101275144.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58861.94 Da        Isoelectric Point: 7.8132

>NTDB_id=622267 LLJ08_RS03090 WP_041015969.1 682474..684066(-) (pilS) [Stutzerimonas chloritidismutans strain 6L11]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISADLHNDLLEMSNPQLFQYGAWIYLILNIIVAVLVQNPERDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSIQRPEASSQYVQASALG
TLCFAAAFLVQGLARRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQDSLAGERLA
PRCPELLKALQQWRGNPTLRPPNLRATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLGPQ
QTLHLDTVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQNPRAQVWLRLFRDEASDLPIVEVLDDGPGIAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=622267 LLJ08_RS03090 WP_041015969.1 682474..684066(-) (pilS) [Stutzerimonas chloritidismutans strain 6L11]
GTGGGCACTGAAAACCTCACCTTCTTTGGCGATCAGGGACGGCGGATTCTCCGCCTGTACCACCTCTATCGGCTGACCAT
CGGCCTGGCGCTGGTTCTGCTGATCAGCGCCGACCTGCACAACGACCTGCTGGAGATGAGCAACCCGCAGCTCTTTCAGT
ACGGCGCCTGGATCTACCTGATCCTCAACATCATCGTCGCCGTGCTGGTGCAGAACCCGGAGCGCGATCTGCCCGTGCTC
GGGCTGGCGCTGATGGACGTCATCCTGCTGTCCGGGCTGTTCTACTTCGGCGGTGGCACCCCGAGCGGTATCGGCAACCT
GCTGATAGTTGCCGTTGCCATCGCCAACATACTGCTGCGTGGCAGGGTCGGTTTCTTCATCGCCGCGGTTGCTGCGACGG
GCCTGATCTACCTGACCTTCTACCTCAGCATTCAACGCCCCGAAGCCAGCAGCCAGTACGTTCAGGCCAGCGCACTCGGC
ACGCTCTGCTTTGCTGCCGCCTTCCTGGTTCAGGGGCTGGCTCGCCGCCTGCAGGTCAGCGAGACGCTGGCGCGCCAGCG
TGCGGAAGAGGTGGCGAACCTGGAGGCGCTCAACGCGCTGATCCTCCAGCGCATGCGTACCGGCATCATGGTGCTGGACC
CGCAGGAGCGCGTTCTGCTCGCCAATCAGGGGGCTCTGCAACTGCTCGGCCAGGACTCGCTGGCAGGCGAACGCCTCGCA
CCGCGCTGCCCGGAGCTGCTCAAGGCACTGCAACAGTGGCGAGGCAATCCGACCCTGCGCCCACCGAACCTCAGGGCAAC
GCCTGGCGGCCCAACGCTGCAGCCGAGCTTCGCCGCGCTACAGCACGGGAACAAGCTCGACACGCTGGTGTTTCTCGAGG
ACATCTCGCAGATCGCGCAGAAGGCCCAGCAGCTCAAGCTCGCCTCGCTCGGCCGCCTCACAGCCAGCATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGCCATGCCGCGCAGCTACTGCAGGAATCCGAAGAACTGGACGGACCTGACCGCCG
TCTGGCACAGATCATTCAGGATCATTCTCGGCGGATGAACTTGGTGATCGAGAACGTCCTCCAGCTTTCCCGGCGGCGCC
AGGCCGAACCCCAGCTGCTGGACCTGAAGTACTGGTTGCATCGTTTCGCCAGCGAGTTCCGCCAGGGGCTCGGCCCGCAG
CAGACCCTGCATCTGGATACCGTGGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGACCAA
CCTGGTCCAGAACGGGCTGCGCTACAGCGGCCAGCAGAATCCGCGGGCGCAGGTCTGGCTCCGCCTGTTCCGTGACGAAG
CCAGCGACCTGCCTATCGTCGAAGTGCTCGATGACGGCCCTGGTATCGCGGCCGAGCAACTTCAGAACATCTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGCACCGGGCTGGGGCTATATATCTCCCGCGAGCTATGCGAAAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCCCCGAGGGCGGCAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-240)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.226

100

0.662