Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LKM46_RS22690 Genome accession   NZ_CP086016
Coordinates   4734249..4734884 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4729249..4739884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS22660 (LKM46_22660) murB 4730347..4731366 (-) 1020 WP_042168960.1 UDP-N-acetylmuramate dehydrogenase -
  LKM46_RS22665 (LKM46_22665) - 4731363..4731827 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  LKM46_RS22670 (LKM46_22670) kdsB 4731827..4732591 (-) 765 WP_033968892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LKM46_RS22675 (LKM46_22675) - 4732591..4732776 (-) 186 WP_003091157.1 Trm112 family protein -
  LKM46_RS22680 (LKM46_22680) lpxK 4732814..4733812 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  LKM46_RS22685 (LKM46_22685) - 4733812..4734252 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  LKM46_RS22690 (LKM46_22690) exbB 4734249..4734884 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LKM46_RS22695 (LKM46_22695) comA 4734957..4737182 (-) 2226 WP_058173609.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LKM46_RS22700 (LKM46_22700) - 4737313..4737846 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  LKM46_RS22705 (LKM46_22705) - 4737934..4739178 (-) 1245 WP_033968896.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=622067 LKM46_RS22690 WP_003091163.1 4734249..4734884(-) (exbB) [Pseudomonas aeruginosa isolate KB-PA_3]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=622067 LKM46_RS22690 WP_003091163.1 4734249..4734884(-) (exbB) [Pseudomonas aeruginosa isolate KB-PA_3]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81