Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LJC78_RS18955 Genome accession   NZ_CP086007
Coordinates   3526698..3527387 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3521698..3532387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS18920 (LJC78_18920) flgN 3521878..3522360 (-) 483 WP_014481048.1 flagellar protein FlgN -
  LJC78_RS18925 (LJC78_18925) flgM 3522376..3522642 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  LJC78_RS18930 (LJC78_18930) yvyF 3522723..3523142 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  LJC78_RS18935 (LJC78_18935) comFC 3523215..3523937 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  LJC78_RS18940 (LJC78_18940) comFB 3523901..3524197 (-) 297 WP_003227989.1 late competence protein ComFB -
  LJC78_RS18945 (LJC78_18945) comFA 3524257..3525648 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  LJC78_RS18950 (LJC78_18950) fakBA 3525755..3526600 (-) 846 WP_014481053.1 DegV family protein -
  LJC78_RS18955 (LJC78_18955) degU 3526698..3527387 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  LJC78_RS18960 (LJC78_18960) degS 3527470..3528627 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LJC78_RS18965 (LJC78_18965) - 3528844..3529497 (+) 654 WP_014481055.1 YigZ family protein -
  LJC78_RS18970 (LJC78_18970) - 3529497..3530489 (+) 993 WP_014481056.1 LCP family protein -
  LJC78_RS18975 (LJC78_18975) - 3531087..3531551 (+) 465 WP_225910700.1 hypothetical protein -
  LJC78_RS18980 (LJC78_18980) - 3531600..3532055 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=622001 LJC78_RS18955 WP_014481054.1 3526698..3527387(-) (degU) [Bacillus subtilis subsp. natto strain SCP010-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=622001 LJC78_RS18955 WP_014481054.1 3526698..3527387(-) (degU) [Bacillus subtilis subsp. natto strain SCP010-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996