Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LJC78_RS18945 Genome accession   NZ_CP086007
Coordinates   3524257..3525648 (-) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519257..3530648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS18910 (LJC78_18910) flgL 3519429..3520325 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  LJC78_RS18915 (LJC78_18915) flgK 3520336..3521859 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  LJC78_RS18920 (LJC78_18920) flgN 3521878..3522360 (-) 483 WP_014481048.1 flagellar protein FlgN -
  LJC78_RS18925 (LJC78_18925) flgM 3522376..3522642 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  LJC78_RS18930 (LJC78_18930) yvyF 3522723..3523142 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  LJC78_RS18935 (LJC78_18935) comFC 3523215..3523937 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  LJC78_RS18940 (LJC78_18940) comFB 3523901..3524197 (-) 297 WP_003227989.1 late competence protein ComFB -
  LJC78_RS18945 (LJC78_18945) comFA 3524257..3525648 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  LJC78_RS18950 (LJC78_18950) fakBA 3525755..3526600 (-) 846 WP_014481053.1 DegV family protein -
  LJC78_RS18955 (LJC78_18955) degU 3526698..3527387 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  LJC78_RS18960 (LJC78_18960) degS 3527470..3528627 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LJC78_RS18965 (LJC78_18965) - 3528844..3529497 (+) 654 WP_014481055.1 YigZ family protein -
  LJC78_RS18970 (LJC78_18970) - 3529497..3530489 (+) 993 WP_014481056.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=622000 LJC78_RS18945 WP_014481052.1 3524257..3525648(-) (comFA) [Bacillus subtilis subsp. natto strain SCP010-1]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=622000 LJC78_RS18945 WP_014481052.1 3524257..3525648(-) (comFA) [Bacillus subtilis subsp. natto strain SCP010-1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981