Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LJC78_RS12815 Genome accession   NZ_CP086007
Coordinates   2377723..2378793 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2372723..2383793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS12770 (LJC78_12775) tapA 2373202..2373963 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  LJC78_RS12775 (LJC78_12780) yqzG 2374235..2374561 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  LJC78_RS12780 (LJC78_12785) spoIITA 2374603..2374782 (-) 180 WP_014480252.1 YqzE family protein -
  LJC78_RS12785 (LJC78_12790) comGG 2374853..2375227 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  LJC78_RS12790 (LJC78_12795) comGF 2375228..2375611 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  LJC78_RS12795 (LJC78_12800) comGE 2375637..2375984 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  LJC78_RS12800 (LJC78_12805) comGD 2375968..2376399 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  LJC78_RS12805 (LJC78_12810) comGC 2376389..2376685 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  LJC78_RS12810 (LJC78_12815) comGB 2376699..2377736 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  LJC78_RS12815 (LJC78_12820) comGA 2377723..2378793 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  LJC78_RS12820 (LJC78_12825) - 2379005..2379202 (-) 198 WP_014480259.1 CBS domain-containing protein -
  LJC78_RS12825 (LJC78_12830) corA 2379204..2380157 (-) 954 WP_014480260.1 magnesium transporter CorA -
  LJC78_RS12830 (LJC78_12835) yqhB 2380299..2381627 (+) 1329 WP_014480261.1 hemolysin family protein -
  LJC78_RS12835 (LJC78_12840) rsbRD 2381680..2382516 (-) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  LJC78_RS12845 (LJC78_12850) mgsR 2382740..2383120 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  LJC78_RS12850 (LJC78_12855) yqgY 2383352..2383597 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=621979 LJC78_RS12815 WP_004399124.1 2377723..2378793(-) (comGA) [Bacillus subtilis subsp. natto strain SCP010-1]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=621979 LJC78_RS12815 WP_004399124.1 2377723..2378793(-) (comGA) [Bacillus subtilis subsp. natto strain SCP010-1]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1