Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LK437_RS09800 Genome accession   NZ_CP085962
Coordinates   2044418..2045185 (+) Length   255 a.a.
NCBI ID   WP_004319389.1    Uniprot ID   A0A6G5QLT2
Organism   Campylobacter rectus strain FDAARGOS_1549     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2039418..2050185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK437_RS09785 (LK437_09785) - 2040799..2041617 (-) 819 WP_004319464.1 HDOD domain-containing protein -
  LK437_RS09790 (LK437_09790) ilvC 2041749..2042771 (+) 1023 WP_004319455.1 ketol-acid reductoisomerase -
  LK437_RS09795 (LK437_09795) - 2042772..2044421 (+) 1650 WP_004319424.1 divergent polysaccharide deacetylase family protein -
  LK437_RS09800 (LK437_09800) dprA 2044418..2045185 (+) 768 WP_004319389.1 DNA-processing protein DprA Machinery gene
  LK437_RS09805 (LK437_09805) ruvX 2046260..2046634 (+) 375 WP_004319435.1 Holliday junction resolvase RuvX -
  LK437_RS09810 (LK437_09810) - 2046943..2047745 (+) 803 Protein_1938 IS1595 family transposase -
  LK437_RS09815 (LK437_09815) - 2048110..2048250 (-) 141 WP_227932198.1 hypothetical protein -
  LK437_RS12555 - 2048270..2048404 (-) 135 WP_265584361.1 hypothetical protein -
  LK437_RS09820 (LK437_09820) - 2048608..2049036 (-) 429 WP_039888096.1 VOC family protein -
  LK437_RS09825 (LK437_09825) - 2049160..2050041 (-) 882 WP_227932200.1 hypothetical protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 27577.71 Da        Isoelectric Point: 7.7304

>NTDB_id=621685 LK437_RS09800 WP_004319389.1 2044418..2045185(+) (dprA) [Campylobacter rectus strain FDAARGOS_1549]
MNVLTSIPRGLLRLKKPPQKLYFEGNLALLERPMVSIVGSRKASAYTRQCVEALARTLANSGVCVVSGAAIGVDIAAHRG
AYPHTVAVFGNGLNKIYPPSNAKIIKEIYQNALALSEYDPDEPPLAYRFLERNRIVVALSQALVVAQADAKSGSMQSARM
AKELGVPIFTLPQRLGESEGTNELVASGTANLINDFDEFALRFGGKPESAQDDEVIKFCKNGASLDVALAKFGDKIYEYE
LEGKLRISGLTVFAE

Nucleotide


Download         Length: 768 bp        

>NTDB_id=621685 LK437_RS09800 WP_004319389.1 2044418..2045185(+) (dprA) [Campylobacter rectus strain FDAARGOS_1549]
TTGAACGTCTTAACGAGCATCCCGCGCGGTCTTTTGCGTCTTAAAAAGCCGCCGCAAAAGCTGTATTTTGAGGGAAATTT
AGCCTTGCTTGAGCGTCCGATGGTCTCGATCGTGGGCTCTAGAAAGGCAAGCGCTTACACCAGGCAGTGCGTAGAGGCAC
TGGCTAGGACGCTGGCAAACAGCGGCGTTTGCGTAGTTAGCGGAGCGGCTATCGGCGTAGATATCGCCGCGCATAGGGGC
GCATATCCGCACACGGTCGCGGTTTTTGGCAACGGACTAAATAAAATCTATCCTCCAAGTAACGCCAAAATCATCAAAGA
AATCTACCAAAACGCGCTGGCTCTGAGCGAATACGACCCTGACGAGCCGCCGCTCGCGTATAGATTTTTGGAGCGAAACC
GCATCGTAGTCGCGCTCTCGCAAGCTCTAGTGGTCGCGCAGGCCGACGCCAAAAGCGGCTCGATGCAAAGCGCTCGCATG
GCAAAAGAGCTTGGCGTGCCGATATTTACGCTGCCCCAGCGCTTAGGCGAGAGCGAGGGGACGAACGAGCTGGTAGCTAG
CGGCACGGCAAATTTGATAAACGATTTTGACGAATTTGCGCTTCGTTTCGGCGGCAAACCGGAGTCAGCACAAGACGATG
AGGTGATAAAATTTTGCAAAAACGGCGCGAGCCTCGATGTGGCTTTGGCGAAATTCGGCGATAAAATTTACGAATACGAG
CTCGAAGGCAAACTGCGCATATCGGGACTCACGGTGTTTGCGGAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G5QLT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.978

90.588

0.498
  dprA Helicobacter pylori 26695

44.788

100

0.455