Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   HIFGL_RS02835 Genome accession   NC_022356
Coordinates   570736..571419 (+) Length   227 a.a.
NCBI ID   WP_021034777.1    Uniprot ID   -
Organism   Haemophilus influenzae KR494     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 565736..576419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIFGL_RS02810 (HifGL_000562) - 565958..566488 (-) 531 WP_021034773.1 DsbE family thiol:disulfide interchange protein -
  HIFGL_RS02815 (HifGL_000563) nrfE 566488..568395 (-) 1908 WP_021034774.1 heme lyase NrfEFG subunit NrfE -
  HIFGL_RS02820 (HifGL_000564) suhB 568505..569308 (-) 804 WP_005631453.1 inositol-1-monophosphatase -
  HIFGL_RS02825 (HifGL_000565) comN 569508..570020 (+) 513 WP_041175282.1 pilus assembly FimT family protein Machinery gene
  HIFGL_RS02830 (HifGL_000566) comO 570020..570739 (+) 720 WP_021034776.1 PulJ/GspJ family protein Machinery gene
  HIFGL_RS02835 (HifGL_000567) comP 570736..571419 (+) 684 WP_021034777.1 DUF2572 family protein Machinery gene
  HIFGL_RS02840 (HifGL_000568) comQ 571412..571699 (+) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  HIFGL_RS02845 (HifGL_000569) recC 571745..575125 (+) 3381 WP_021034779.1 exodeoxyribonuclease V subunit gamma -
  HIFGL_RS02850 (HifGL_000570) nrdR 575180..575629 (+) 450 WP_021034780.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25455.33 Da        Isoelectric Point: 9.5163

>NTDB_id=62165 HIFGL_RS02835 WP_021034777.1 570736..571419(+) (comP) [Haemophilus influenzae KR494]
MTIQKGIITLTILIFISGLLSVILLLDDSHLSFFRAQQNQRKHYVERTLQLQRITALKKQTACLDLPLNNNESVKQISIT
LDGATDSIQYFLWCERMSLFKKSPKQGDNQGALKDFVSGEKLAYFRPHFSSPPKILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAESDLKLTGKGRIIGAVITNGNLTLDGVTLAYGKKTVVALVQQYSQWKLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=62165 HIFGL_RS02835 WP_021034777.1 570736..571419(+) (comP) [Haemophilus influenzae KR494]
ATGACAATACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCAGGCTTATTAAGCGTAATCTTATTGTTAGA
TGACAGCCATTTAAGTTTTTTTCGGGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAATTACAAAGAA
TAACAGCCTTGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAACAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCTCCTA
AAATTTTAAATGCGAATAAAACGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACGGTG
TCTGCCGTATTAATTGCAGAGAGCGATTTAAAATTGACTGGCAAAGGGAGGATTATTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGAAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

91.63

100

0.916

Multiple sequence alignment