Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   HIFGL_RS02825 Genome accession   NC_022356
Coordinates   569508..570020 (+) Length   170 a.a.
NCBI ID   WP_041175282.1    Uniprot ID   -
Organism   Haemophilus influenzae KR494     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 564508..575020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIFGL_RS02805 (HifGL_000561) nrfF 564819..565961 (-) 1143 WP_021034772.1 heme lyase NrfEFG subunit NrfF -
  HIFGL_RS02810 (HifGL_000562) - 565958..566488 (-) 531 WP_021034773.1 DsbE family thiol:disulfide interchange protein -
  HIFGL_RS02815 (HifGL_000563) nrfE 566488..568395 (-) 1908 WP_021034774.1 heme lyase NrfEFG subunit NrfE -
  HIFGL_RS02820 (HifGL_000564) suhB 568505..569308 (-) 804 WP_005631453.1 inositol-1-monophosphatase -
  HIFGL_RS02825 (HifGL_000565) comN 569508..570020 (+) 513 WP_041175282.1 pilus assembly FimT family protein Machinery gene
  HIFGL_RS02830 (HifGL_000566) comO 570020..570739 (+) 720 WP_021034776.1 PulJ/GspJ family protein Machinery gene
  HIFGL_RS02835 (HifGL_000567) comP 570736..571419 (+) 684 WP_021034777.1 DUF2572 family protein Machinery gene
  HIFGL_RS02840 (HifGL_000568) comQ 571412..571699 (+) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19930.25 Da        Isoelectric Point: 8.7160

>NTDB_id=62163 HIFGL_RS02825 WP_041175282.1 569508..570020(+) (comN) [Haemophilus influenzae KR494]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDLPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHYIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=62163 HIFGL_RS02825 WP_041175282.1 569508..570020(+) (comN) [Haemophilus influenzae KR494]
ATGCAGAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTTACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATTATATTTATCCGAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGTTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.882

100

0.959

Multiple sequence alignment