Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LK443_RS02790 Genome accession   NZ_CP085953
Coordinates   548376..548879 (+) Length   167 a.a.
NCBI ID   WP_227932032.1    Uniprot ID   -
Organism   Granulicatella elegans strain FDAARGOS_1559     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 543376..553879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK443_RS02770 (LK443_02770) - 544975..545870 (+) 896 Protein_500 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase -
  LK443_RS02775 (LK443_02775) - 545933..546130 (-) 198 WP_227932030.1 helix-turn-helix domain-containing protein -
  LK443_RS02780 (LK443_02780) - 546425..547684 (-) 1260 WP_227932438.1 ISNCY family transposase -
  LK443_RS02785 (LK443_02785) rpsF 548034..548339 (+) 306 WP_227932031.1 30S ribosomal protein S6 -
  LK443_RS02790 (LK443_02790) ssb 548376..548879 (+) 504 WP_227932032.1 single-stranded DNA-binding protein Machinery gene
  LK443_RS02795 (LK443_02795) rpsR 548899..549141 (+) 243 WP_227932033.1 30S ribosomal protein S18 -
  LK443_RS02800 (LK443_02800) - 549432..551354 (+) 1923 WP_227932035.1 DHH family phosphoesterase -
  LK443_RS02805 (LK443_02805) rplI 551367..551819 (+) 453 WP_227932036.1 50S ribosomal protein L9 -
  LK443_RS02810 (LK443_02810) rlmH 552047..552526 (-) 480 WP_227932037.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18688.66 Da        Isoelectric Point: 5.2867

>NTDB_id=621610 LK443_RS02790 WP_227932032.1 548376..548879(+) (ssb) [Granulicatella elegans strain FDAARGOS_1559]
MINNVVLVGRLTRPVDLKYTPNGVAVGTFSVACDRRFKNQQGTRETDFINCRIWRERAETLAKYTRKGSLIGVEGRIETR
TYENQQGQKVYVTEVVAENFSLLESKNVTEQRSMNDSYNGYSQQNQYQSQGGYNSPGAPTSSFGNVPADPFLANGEAINI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=621610 LK443_RS02790 WP_227932032.1 548376..548879(+) (ssb) [Granulicatella elegans strain FDAARGOS_1559]
ATGATCAATAATGTTGTGTTAGTTGGTCGTTTAACTCGACCAGTAGACTTAAAATATACTCCAAATGGAGTAGCGGTTGG
AACTTTTTCAGTTGCATGTGACCGCCGTTTTAAAAATCAACAAGGAACAAGAGAAACAGATTTTATTAACTGTAGAATTT
GGAGAGAACGTGCTGAAACGTTAGCGAAGTACACTCGTAAGGGTTCTTTGATTGGAGTTGAAGGACGTATTGAGACTAGA
ACTTATGAAAATCAACAAGGACAAAAAGTTTATGTAACTGAAGTTGTCGCTGAGAATTTTTCATTATTAGAGTCTAAAAA
TGTTACTGAACAACGTTCAATGAATGATTCTTATAACGGTTATTCACAACAAAATCAGTATCAATCACAAGGTGGTTATA
ACTCACCAGGTGCTCCTACATCATCATTTGGAAATGTTCCAGCAGACCCATTTTTAGCTAATGGTGAAGCAATTAATATT
TCTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.047

100

0.629
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.37

100

0.533